Package org.biojava.nbio.core.search.io.blast

Class BlastResultBuilder

java.lang.Object

org.biojava.nbio.core.search.io.blast.BlastResultBuilder

public class BlastResultBuilder
extends Object

Designed by Paolo Pavan. You may want to find my contacts on Github and LinkedIn for code info or discuss major changes. https://github.com/paolopavan

Author:

Paolo Pavan

Constructor Summary

Constructors

Constructor	Description
BlastResultBuilder()

Method Summary

Modifier and Type	Method	Description
BlastResult	createBlastResult()
BlastResultBuilder	setDbFile(String dbFile)
BlastResultBuilder	setHits(List<Hit> hits)
BlastResultBuilder	setIterationNumber(int iterationNumber)
BlastResultBuilder	setProgram(String program)
BlastResultBuilder	setProgramSpecificParameters(Map<String,String> programSpecificParameters)
BlastResultBuilder	setQueryDef(String queryDef)
BlastResultBuilder	setQueryID(String queryID)
BlastResultBuilder	setQueryLength(int queryLength)
BlastResultBuilder	setQuerySequence(Sequence s)
BlastResultBuilder	setReference(String reference)
BlastResultBuilder	setVersion(String version)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

BlastResultBuilder

public BlastResultBuilder()

Method Details

setProgram

public BlastResultBuilder setProgram(String program)

setVersion

public BlastResultBuilder setVersion(String version)

setReference

public BlastResultBuilder setReference(String reference)

setDbFile

public BlastResultBuilder setDbFile(String dbFile)

setProgramSpecificParameters

public BlastResultBuilder setProgramSpecificParameters(Map<String,String> programSpecificParameters)

setIterationNumber

public BlastResultBuilder setIterationNumber(int iterationNumber)

setQueryID

public BlastResultBuilder setQueryID(String queryID)

setQueryDef

public BlastResultBuilder setQueryDef(String queryDef)

setQueryLength

public BlastResultBuilder setQueryLength(int queryLength)

setHits

public BlastResultBuilder setHits(List<Hit> hits)

setQuerySequence

public BlastResultBuilder setQuerySequence(Sequence s)

createBlastResult

public BlastResult createBlastResult()