Package org.biojava.nbio.core.sequence.compound

Class ABITracerCompoundSet

java.lang.Object

org.biojava.nbio.core.sequence.template.AbstractCompoundSet<C>

org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet<NucleotideCompound>

org.biojava.nbio.core.sequence.compound.ABITracerCompoundSet

All Implemented Interfaces:

CompoundSet<NucleotideCompound>

public class ABITracerCompoundSet
extends AbstractNucleotideCompoundSet<NucleotideCompound>

Author:

Maximilian Greil

Constructor Summary

Constructors

Constructor	Description
ABITracerCompoundSet()

Method Summary

Modifier and Type	Method	Description
static ABITracerCompoundSet	getABITracerCompoundSet()
NucleotideCompound	newNucleotideCompound(String base, String complement, String... equivalents)

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet

addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompoundSet

addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, isValidSequence

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ABITracerCompoundSet

public ABITracerCompoundSet()

Method Detail

getABITracerCompoundSet

public static ABITracerCompoundSet getABITracerCompoundSet()

newNucleotideCompound

public NucleotideCompound newNucleotideCompound(String base,
                                                String complement,
                                                String... equivalents)

Specified by:

newNucleotideCompound in class AbstractNucleotideCompoundSet<NucleotideCompound>