Package org.biojava.nbio.core.sequence.io

Class GenericInsdcHeaderFormat<S extends AbstractSequence<C>,C extends Compound>

java.lang.Object

org.biojava.nbio.core.sequence.io.GenericInsdcHeaderFormat<S,C>

Direct Known Subclasses:

GenericGenbankHeaderFormat

public class GenericInsdcHeaderFormat<S extends AbstractSequence<C>,C extends Compound>
extends Object

Author:

mckeee1

Field Summary

Fields

Modifier and Type	Field	Description
protected static final int	MAX_WIDTH
protected static final int	QUALIFIER_INDENT
protected static final String	QUALIFIER_INDENT_STR
protected static final String	QUALIFIER_INDENT_TMP

Constructor Summary

Constructors

Constructor	Description
GenericInsdcHeaderFormat()

Method Summary

Modifier and Type	Method	Description
protected List<String>	_split_multi_line(String text, int max_len)	Returns a list of strings.
protected String	_write_feature(FeatureInterface<AbstractSequence<C>,C> feature, int record_length)	Write a single SeqFeature object to features table.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

MAX_WIDTH

protected static final int MAX_WIDTH

See Also:

• Constant Field Values

QUALIFIER_INDENT

protected static final int QUALIFIER_INDENT

See Also:

• Constant Field Values

QUALIFIER_INDENT_STR

protected static final String QUALIFIER_INDENT_STR

See Also:

• Constant Field Values

QUALIFIER_INDENT_TMP

protected static final String QUALIFIER_INDENT_TMP

See Also:

• Constant Field Values

Constructor Details

GenericInsdcHeaderFormat

public GenericInsdcHeaderFormat()

Method Details

_write_feature

protected String _write_feature(FeatureInterface<AbstractSequence<C>,C> feature,
 int record_length)

Write a single SeqFeature object to features table.

Parameters:

feature -

record_length -

_split_multi_line

protected List<String> _split_multi_line(String text,
 int max_len)

Returns a list of strings. Any single words which are too long get returned as a whole line (e.g. URLs) without an exception or warning.

Parameters:

text -

max_len -