Package org.biojava.nbio.core.sequence.location

Class InsdcLocations.OrderLocation

java.lang.Object

org.biojava.nbio.core.sequence.location.template.AbstractLocation

org.biojava.nbio.core.sequence.location.SimpleLocation

org.biojava.nbio.core.sequence.location.InsdcLocations.OrderLocation

All Implemented Interfaces:

Serializable, Iterable<Location>, Location, Accessioned

Enclosing class:

InsdcLocations

public static class InsdcLocations.OrderLocation
extends SimpleLocation

Used to describe a 5' to 3' ordering but no firm assurance it is correct

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.nbio.core.sequence.location.template.Location

Location.Tools

Field Summary

Fields inherited from interface org.biojava.nbio.core.sequence.location.template.Location

EMPTY

Constructor Summary

Constructors

Constructor	Description
OrderLocation(int start, int end, Strand strand, List<Location> subLocations)
OrderLocation(int start, int end, Strand strand, Location... subLocations)
OrderLocation(List<Location> subLocations)
OrderLocation(Location... subLocations)
OrderLocation(Point start, Point end, Strand strand, boolean circular, List<Location> subLocations)
OrderLocation(Point start, Point end, Strand strand, boolean circular, Location... subLocations)
OrderLocation(Point start, Point end, Strand strand, List<Location> subLocations)
OrderLocation(Point start, Point end, Strand strand, Location... subLocations)

Method Summary

Methods inherited from class org.biojava.nbio.core.sequence.location.template.AbstractLocation

assertLocation, canComplement, equals, getAccession, getEnd, getLength, getRelevantSubLocations, getRelevantSubSequence, getStart, getStrand, getSubLocations, getSubSequence, hashCode, isBetweenCompounds, isCircular, isComplex, isPartial, isPartialOn3prime, isPartialOn5prime, iterator, reverseSequence, setAccession, setBetweenCompounds, setCircular, setEnd, setPartialOn3prime, setPartialOn5prime, setStart, setStrand, setSubLocations, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Constructor Details

OrderLocation

public OrderLocation(List<Location> subLocations)

OrderLocation

public OrderLocation(Location... subLocations)

OrderLocation

public OrderLocation(Point start,
 Point end,
 Strand strand,
 boolean circular,
 Location... subLocations)

OrderLocation

public OrderLocation(Point start,
 Point end,
 Strand strand,
 Location... subLocations)

OrderLocation

public OrderLocation(int start,
 int end,
 Strand strand,
 Location... subLocations)

OrderLocation

public OrderLocation(Point start,
 Point end,
 Strand strand,
 boolean circular,
 List<Location> subLocations)

OrderLocation

public OrderLocation(Point start,
 Point end,
 Strand strand,
 List<Location> subLocations)

OrderLocation

public OrderLocation(int start,
 int end,
 Strand strand,
 List<Location> subLocations)