Uses of Package
org.biojava.nbio.structure.align.ce
Packages that use org.biojava.nbio.structure.align.ce
Package
Description
Classes for the alignment of structures.
Classes related to the implementation of the CE alignment algorithm, here called jCE.
Classes related to the implementation of the FATCAT alignment algorithm, here called jFATCAT.
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Classes in org.biojava.nbio.structure.align.ce used by org.biojava.nbio.structure.align
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Classes in org.biojava.nbio.structure.align.ce used by org.biojava.nbio.structure.align.ceClassDescriptionBase class for a new structure alignment CLI.This is based on the original Combinatorial Extension (CE) source code from 2003 or 2004 (CE version 2.3), as has been originally developed by I.Tiny wrapper for the disallowed regions of an alignment.Provides parameters to
CeCPMainThe main class of the Java implementation of the Combinatorial Extension Algorithm (CE), as has been originally developed by I.Contains the parameters that can be sent to CEProcess the arguments from command lineContains the parameters that can be sent to CEA simple bean that contains the parameters that can get set at startup -
Classes in org.biojava.nbio.structure.align.ce used by org.biojava.nbio.structure.align.fatcatClassDescriptionBase class for a new structure alignment CLI.A simple bean that contains the parameters that can get set at startup
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Classes in org.biojava.nbio.structure.align.ce used by org.biojava.nbio.structure.align.fatcat.calc
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Classes in org.biojava.nbio.structure.align.ce used by org.biojava.nbio.structure.align.gui
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Classes in org.biojava.nbio.structure.align.ce used by org.biojava.nbio.structure.align.multiple.mc
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Classes in org.biojava.nbio.structure.align.ce used by org.biojava.nbio.structure.align.seqClassDescriptionBase class for a new structure alignment CLI.A simple bean that contains the parameters that can get set at startup
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Classes in org.biojava.nbio.structure.align.ce used by org.biojava.nbio.structure.align.utilClassDescriptionA simple bean that contains the parameters that can get set at startup
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Classes in org.biojava.nbio.structure.align.ce used by org.biojava.nbio.structure.symmetry.internal
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Classes in org.biojava.nbio.structure.align.ce used by org.biojava.nbio.structure.symmetry.utilsClassDescriptionThis is based on the original Combinatorial Extension (CE) source code from 2003 or 2004 (CE version 2.3), as has been originally developed by I.