Classes for the pairwise alignment of structures.
Interface Summary Interface Description Alignable
Class Summary Class Description AlignmentProgressListenerA class to listen to progress of the structure alignment calculations AlignmentResultA class to track the alignment results in a flat file AligNPE AltAligComparatora comparator to sort AlternativeAlignments based on their number of equivalent residues and RMSD. AlternativeAlignmentImplements a class which handles one possible (alternative) solution. FragmentJoinerJoins the initial Fragments together to larger Fragments FragmentPaira pair of fragments of two protein structures Gotoha class to perform Gotoh algorithm StrCompAlignment