Package org.biojava.nbio.structure.align.pairwise

Class AlignmentProgressListener

java.lang.Object

org.biojava.nbio.structure.align.pairwise.AlignmentProgressListener

public class AlignmentProgressListener
extends Object

A class to listen to progress of the structure alignment calculations

Author:

andreas

Constructor Summary

Constructors

Constructor	Description
AlignmentProgressListener()

Method Summary

Modifier and Type	Method	Description
void	calculatedFragmentPairs(List<FragmentPair> fragments)
void	jointFragments(JointFragments[] fragments)
void	startingAlignment(String name1, Atom[] ca1, String name2, Atom[] ca2)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AlignmentProgressListener

public AlignmentProgressListener()

Method Details

startingAlignment

public void startingAlignment(String name1,
 Atom[] ca1,
 String name2,
 Atom[] ca2)

calculatedFragmentPairs

public void calculatedFragmentPairs(List<FragmentPair> fragments)

jointFragments

public void jointFragments(JointFragments[] fragments)