Package org.biojava.nbio.structure.basepairs

package org.biojava.nbio.structure.basepairs

Related Packages

Package	Description
org.biojava.nbio.structure	Interfaces and classes for protein structure (PDB).

Classes

Class	Description
BasePairParameters	This module calculates the el Hassan-Calladine Base Pairing and Base-pair Step Parameters for any nucleic acid containing structure that has the information about the core base-pair rings.
MismatchedBasePairParameters	This class allows for finding inter-strand base pairs that are not necessarily canonical Watson-Crick pairs.
TertiaryBasePairParameters	This class also finds the base pairing and base-pair step parameters but has a broader definition of a base pair so that non-canonical-WC base pairs will be detected and reported.