Package org.biojava.nbio.structure.chem

Enum ResidueType

java.lang.Object

java.lang.Enum<ResidueType>

org.biojava.nbio.structure.chem.ResidueType

All Implemented Interfaces:

Serializable, Comparable<ResidueType>

public enum ResidueType
extends Enum<ResidueType>
implements Serializable

Enumerates the possible classifications of residues. These are generally more specific than PolymerTypes This information is derived from the mmcif dictionary.

Since:

1.7

Author:

mulvaney, Andreas Prlic

See Also:

link into mmCIF dictionary

Enum Constant Summary

Enum Constants

Enum Constant	Description
atomn
dBetaPeptideCGammaLinking
dGammaPeptideCDeltaLinking
dna3PrimeTerminus
dna5PrimeTerminus
dnaLinking
dPeptideAminoTerminus
dPeptideCarboxyTerminus
dPeptideLinking
dSaccharide
dSaccharide14and14linking
dSaccharide14and16linking
glycine
lBetaPeptideCGammaLinking
lDNALinking
lGammaPeptideCDeltaLinking
lPeptideAminoTerminus
lPeptideCarboxyTerminus
lPeptideLinking
lRNALinking
lSaccharide
lSaccharide14and14linking
lSaccharide14and16linking
nonPolymer
otherChemComp
peptideLike
rna3PrimeTerminus
rna5PrimeTerminus
rnaLinking
saccharide

Field Summary

Fields

Modifier and Type	Field	Description
String	chem_comp_type	String value of the type
PolymerType	polymerType	The associated PolymerType

Method Summary

Modifier and Type	Method	Description
PolymerType	getPolymerType()	Gets the associated PolymerType, which are less specific
static ResidueType	getResidueTypeFromString(String chem_comp_type)	Get ResidueType by chem_comp_type
static ResidueType	valueOf(String name)	Returns the enum constant of this type with the specified name.
static ResidueType[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

atomn

public static final ResidueType atomn

dPeptideLinking

public static final ResidueType dPeptideLinking

lPeptideLinking

public static final ResidueType lPeptideLinking

glycine

public static final ResidueType glycine

peptideLike

public static final ResidueType peptideLike

dPeptideAminoTerminus

public static final ResidueType dPeptideAminoTerminus

lPeptideAminoTerminus

public static final ResidueType lPeptideAminoTerminus

dPeptideCarboxyTerminus

public static final ResidueType dPeptideCarboxyTerminus

lPeptideCarboxyTerminus

public static final ResidueType lPeptideCarboxyTerminus

dnaLinking

public static final ResidueType dnaLinking

rnaLinking

public static final ResidueType rnaLinking

dna3PrimeTerminus

public static final ResidueType dna3PrimeTerminus

rna3PrimeTerminus

public static final ResidueType rna3PrimeTerminus

dna5PrimeTerminus

public static final ResidueType dna5PrimeTerminus

rna5PrimeTerminus

public static final ResidueType rna5PrimeTerminus

dSaccharide

public static final ResidueType dSaccharide

dSaccharide14and14linking

public static final ResidueType dSaccharide14and14linking

dSaccharide14and16linking

public static final ResidueType dSaccharide14and16linking

lSaccharide

public static final ResidueType lSaccharide

lSaccharide14and14linking

public static final ResidueType lSaccharide14and14linking

lSaccharide14and16linking

public static final ResidueType lSaccharide14and16linking

saccharide

public static final ResidueType saccharide

dBetaPeptideCGammaLinking

public static final ResidueType dBetaPeptideCGammaLinking

dGammaPeptideCDeltaLinking

public static final ResidueType dGammaPeptideCDeltaLinking

lBetaPeptideCGammaLinking

public static final ResidueType lBetaPeptideCGammaLinking

lGammaPeptideCDeltaLinking

public static final ResidueType lGammaPeptideCDeltaLinking

lDNALinking

public static final ResidueType lDNALinking

lRNALinking

public static final ResidueType lRNALinking

nonPolymer

public static final ResidueType nonPolymer

otherChemComp

public static final ResidueType otherChemComp

Field Detail

polymerType

public final PolymerType polymerType

The associated PolymerType

chem_comp_type

public final String chem_comp_type

String value of the type

Method Detail

values

public static ResidueType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (ResidueType c : ResidueType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static ResidueType valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getPolymerType

public PolymerType getPolymerType()

Gets the associated PolymerType, which are less specific

Returns:

getResidueTypeFromString

public static ResidueType getResidueTypeFromString(String chem_comp_type)

Get ResidueType by chem_comp_type

Parameters:

chem_comp_type - e.g. L-peptide linking

Returns: