A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. Possible start classes are BiojavaJmol, AlignmentGui. Also MVC interface for structure-gui
Interface Summary Interface Description Selection StructureViewer
Class Summary Class Description BiojavaJmolA class that provides a simple GUI for Jmol JMatrixPanela JPanel that can display a difference of distance matrix and paths that have been taken for the alignment JmolViewerImpl ScaleableMatrixPanelA JPanel that can display the underlying distance matrix data of the protein structure alignment algorithm. SelectionImpl SequenceDisplayA sequence display that can show the results of a protein structure alignment. WrapLayoutFlowLayout subclass that fully supports wrapping of components.
Enum Summary Enum Description RenderStyle