Package org.biojava.nbio.structure.gui

package org.biojava.nbio.structure.gui

A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. Possible start classes are BiojavaJmol, AlignmentGui. Also MVC interface for structure-gui

Related Packages

Package	Description
org.biojava.nbio.structure	Interfaces and classes for protein structure (PDB).
org.biojava.nbio.structure.gui.events	Some event classes for the protein structure GUIs.
org.biojava.nbio.structure.gui.util	Some utility classes for the protein structure GUIs.

Class	Description
BiojavaJmol	A class that provides a simple GUI for Jmol
JMatrixPanel	a JPanel that can display a difference of distance matrix and paths that have been taken for the alignment
JmolViewerImpl
RenderStyle
ScaleableMatrixPanel	A JPanel that can display the underlying distance matrix data of the protein structure alignment algorithm.
Selection
SelectionImpl
SequenceDisplay	A sequence display that can show the results of a protein structure alignment.
StructureViewer
WrapLayout	FlowLayout subclass that fully supports wrapping of components.