A class that provides a simple GUI for Jmol
a JPanel that can display a difference of distance matrix and paths that have been taken for the alignment Note: This panel displays the transpose of its underlying matrix.
A JPanel that can display the underlying distance matrix data of the protein structure alignment algorithm.
A sequence display that can show the results of a protein structure alignment.
FlowLayout subclass that fully supports wrapping of components.
A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. Possible start classes are BiojavaJmol, AlignmentGui. Also MVC interface for structure-gui
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