public class GraphComponentRefiner extends Object implements SymmetryRefiner
Given a set of components and their pairwise compatibilities, iteratively add the most compatible component, which is compatible to all the components already added, to the final alignment.
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|Modifier and Type||Method and Description|
Returns a refined symmetry alignment, where the repeat residues are aligned consistently in a MultipleAlignment.
public MultipleAlignment refine(AFPChain selfAlignment, Atom atoms, int order) throws StructureException, RefinerFailedException
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