Class SequenceFunctionRefiner

  • All Implemented Interfaces:
    SymmetryRefiner

    public class SequenceFunctionRefiner
    extends Object
    implements SymmetryRefiner
    Creates a refined alignment with the CE-Symm alternative self-alignment. Needs the order of symmetry and assumes that the last repeat aligns with the first, being thus a CLOSE symmetry.
    Since:
    4.2.0
    Author:
    Spencer Bliven, Aleix Lafita