Package org.biojava.nbio.ws.hmmer

Class HmmerResult

java.lang.Object

org.biojava.nbio.ws.hmmer.HmmerResult

All Implemented Interfaces:

Serializable, Comparable<HmmerResult>

public class HmmerResult
extends Object
implements Comparable<HmmerResult>, Serializable

The results of a Hmmer search for a single sequence

Since:

3.0.3

Author:

Andreas Prlic

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
HmmerResult()

Method Summary

Modifier and Type	Method	Description
int	compareTo(HmmerResult o)
String	getAcc()
Integer	getDcl()
String	getDesc()
SortedSet<HmmerDomain>	getDomains()
Float	getEvalue()
String	getName()
Integer	getNdom()
Integer	getNreported()
int	getOverlapLength(HmmerResult other)	Get the overlap between two HmmerResult objects
Double	getPvalue()
Float	getScore()
void	setAcc(String acc)
void	setDcl(Integer dcl)
void	setDesc(String desc)
void	setDomains(SortedSet<HmmerDomain> domains)
void	setEvalue(Float evalue)
void	setName(String name)
void	setNdom(Integer ndom)
void	setNreported(Integer nreported)
void	setPvalue(Double pvalue)
void	setScore(Float score)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

HmmerResult

public HmmerResult()

Method Details

getDomains

public SortedSet<HmmerDomain> getDomains()

setDomains

public void setDomains(SortedSet<HmmerDomain> domains)

getDesc

public String getDesc()

setDesc

public void setDesc(String desc)

getScore

public Float getScore()

setScore

public void setScore(Float score)

getEvalue

public Float getEvalue()

setEvalue

public void setEvalue(Float evalue)

getPvalue

public Double getPvalue()

setPvalue

public void setPvalue(Double pvalue)

getAcc

public String getAcc()

setAcc

public void setAcc(String acc)

getDcl

public Integer getDcl()

setDcl

public void setDcl(Integer dcl)

getName

public String getName()

setName

public void setName(String name)

getNdom

public Integer getNdom()

setNdom

public void setNdom(Integer ndom)

getNreported

public Integer getNreported()

setNreported

public void setNreported(Integer nreported)

toString

public String toString()

Overrides:

toString in class Object

compareTo

public int compareTo(HmmerResult o)

Specified by:

compareTo in interface Comparable<HmmerResult>

getOverlapLength

public int getOverlapLength(HmmerResult other)

Get the overlap between two HmmerResult objects

Parameters:

other -

Returns:

0 if no overlap, otherwise the length of the overlap