Uses of Class
org.biojava.bio.chromatogram.AbstractChromatogram

Packages that use AbstractChromatogram

Package	Description
org.biojava.bio.chromatogram	Interfaces and classes for chromatogram data, as produced by DNA sequencing equipment.
org.biojava.bio.program.abi	ABI Trace Handling.
org.biojava.bio.program.scf	Support for the SCF chromatogram format.

Uses of AbstractChromatogram in org.biojava.bio.chromatogram

Subclasses of AbstractChromatogram in org.biojava.bio.chromatogram

Modifier and Type	Class and Description
class	SimpleChromatogram A basic chromatogram implementation which provides public mutators for setting the various attributes of the chromatogram.

Methods in org.biojava.bio.chromatogram that return AbstractChromatogram

Modifier and Type	Method and Description
protected AbstractChromatogram	SimpleChromatogram.reverseComplementInstance()
protected abstract AbstractChromatogram	AbstractChromatogram.reverseComplementInstance() Returns a new instance of this AbstractChromatogram subclass for use in reverseComplement().

Uses of AbstractChromatogram in org.biojava.bio.program.abi

Subclasses of AbstractChromatogram in org.biojava.bio.program.abi

Modifier and Type	Class and Description
class	ABIFChromatogram An implementation of Chromatogram to encapulsulate chromatogram data extracted from the files produced by ABI sequencers, such as the the 377 and the 3700.

Methods in org.biojava.bio.program.abi that return AbstractChromatogram

Modifier and Type	Method and Description
protected AbstractChromatogram	ABIFChromatogram.reverseComplementInstance()

Uses of AbstractChromatogram in org.biojava.bio.program.scf

Subclasses of AbstractChromatogram in org.biojava.bio.program.scf

Modifier and Type	Class and Description
class	SCF A Chromatogram as loaded from an SCF v2 or v3 file.

Methods in org.biojava.bio.program.scf that return AbstractChromatogram

Modifier and Type	Method and Description
protected AbstractChromatogram	SCF.reverseComplementInstance()