Uses of Interface
org.biojava.bio.dist.DistributionTrainerContext

Packages that use DistributionTrainerContext

Package	Description
org.biojava.bio.dist	Probability distributions over Alphabets.
org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.

Uses of DistributionTrainerContext in org.biojava.bio.dist

Classes in org.biojava.bio.dist that implement DistributionTrainerContext

Modifier and Type	Class and Description
class	SimpleDistributionTrainerContext A no-frills implementation of DistributionTrainerContext.

Methods in org.biojava.bio.dist with parameters of type DistributionTrainerContext

Modifier and Type	Method and Description
void	SimpleDistributionTrainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double count) Deprecated.
void	SimpleDistribution.Trainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double times)
void	IgnoreCountsTrainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double times)
void	DistributionTrainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double times) Registers that sym was counted in this state.
void	SimpleDistributionTrainer.clearCounts(DistributionTrainerContext dtc) Deprecated.
void	SimpleDistribution.Trainer.clearCounts(DistributionTrainerContext dtc)
void	IgnoreCountsTrainer.clearCounts(DistributionTrainerContext dtc)
void	DistributionTrainer.clearCounts(DistributionTrainerContext dtc) Clears all of the counts to zero.
double	SimpleDistributionTrainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym) Deprecated.
double	SimpleDistribution.Trainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym)
double	IgnoreCountsTrainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym)
double	DistributionTrainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym) Get the current count for this state.
void	UntrainableDistribution.registerWithTrainer(DistributionTrainerContext dtc)
void	UniformDistribution.registerWithTrainer(DistributionTrainerContext dtc)
void	TranslatedDistribution.registerWithTrainer(DistributionTrainerContext dtc)
void	SimpleDistribution.registerWithTrainer(DistributionTrainerContext dtc) Register an SimpleDistribution.Trainer instance as the trainer for this distribution.
void	PairDistribution.registerWithTrainer(DistributionTrainerContext dtc)
void	GapDistribution.registerWithTrainer(DistributionTrainerContext dtc)
void	Distribution.registerWithTrainer(DistributionTrainerContext dtc) Register this distribution with a training context.
void	AbstractOrderNDistribution.registerWithTrainer(DistributionTrainerContext dtc)
void	AbstractDistribution.registerWithTrainer(DistributionTrainerContext dtc) Register an IgnoreCountsTrainer instance as the trainer for this distribution.
void	SimpleDistributionTrainer.train(DistributionTrainerContext dtc, double weight) Deprecated.
void	SimpleDistribution.Trainer.train(DistributionTrainerContext dtc, double weight)
void	IgnoreCountsTrainer.train(DistributionTrainerContext dtc, double weight)
void	DistributionTrainer.train(DistributionTrainerContext dtc, double weight) Trains the Distribution, given a null model.
protected void	SimpleDistribution.Trainer.trainImpl(DistributionTrainerContext dtc, double weight)

Uses of DistributionTrainerContext in org.biojava.bio.dp

Subinterfaces of DistributionTrainerContext in org.biojava.bio.dp

Modifier and Type	Interface and Description
interface	ModelTrainer Encapsulates the training of an entire model.

Classes in org.biojava.bio.dp that implement DistributionTrainerContext

Modifier and Type	Class and Description
class	SimpleModelTrainer