org.biojava.bio.dp

Class SimpleDotState

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojava.bio.symbol.AbstractSymbol

org.biojava.bio.symbol.FundamentalAtomicSymbol

org.biojava.bio.dp.SimpleDotState

All Implemented Interfaces:

Serializable, Annotatable, DotState, State, AtomicSymbol, BasisSymbol, Symbol, Changeable

public class SimpleDotState
extends FundamentalAtomicSymbol
implements DotState, Serializable

A Dot state that you can make and use.

Dot states emit no sequence. They are there purely to make the wireing of the model look neater, and to cut down the number of combinatorial transitions that can so easily swamp models.

Author:

Matthew Pocock, Thomas Down

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable

Annotatable.AnnotationForwarder

Field Summary

Fields inherited from class org.biojava.bio.symbol.AbstractSymbol

annotationForwarder

Fields inherited from interface org.biojava.bio.Annotatable

ANNOTATION

Constructor Summary

Constructors

Constructor and Description
SimpleDotState(char token, String name, Annotation annotation) Deprecated. token is ignored since 1.2. Use the 2-arg constructor instead.
SimpleDotState(String name)
SimpleDotState(String name, Annotation annotation) Construct a new state with the specified name and annotation

Method Summary

Methods inherited from class org.biojava.bio.symbol.FundamentalAtomicSymbol

getAnnotation, getMatches, getName, getSymbols

Methods inherited from class org.biojava.bio.symbol.AbstractSymbol

getChangeSupport, toString

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biojava.bio.symbol.BasisSymbol

getSymbols

Methods inherited from interface org.biojava.bio.symbol.Symbol

getMatches, getName

Methods inherited from interface org.biojava.bio.Annotatable

getAnnotation

Methods inherited from interface org.biojava.utils.Changeable

addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Constructor Detail

SimpleDotState

public SimpleDotState(char token,
              String name,
              Annotation annotation)

Deprecated. token is ignored since 1.2. Use the 2-arg constructor instead.

Construct a new state with the specified name and annotation. The token parameter is ignored but included for compatibility.

SimpleDotState

public SimpleDotState(String name,
              Annotation annotation)

Construct a new state with the specified name and annotation

SimpleDotState

public SimpleDotState(String name)