| Package | Description |
|---|---|
| org.biojava.bio.dp |
HMM and Dynamic Programming Algorithms.
|
| org.biojava.bio.program.hmmer |
Tools for working with profile Hidden Markov Models from the HMMer package.
|
| Modifier and Type | Interface and Description |
|---|---|
interface |
EmissionState
A state in a markov process that has an emission spectrum.
|
| Modifier and Type | Class and Description |
|---|---|
class |
MagicalState
Start/end state for HMMs.
|
class |
SimpleEmissionState |
| Modifier and Type | Class and Description |
|---|---|
class |
ProfileEmissionState
A state in a HMMer model.
|
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