org.biojava.bio.gui.sequence

Class PairwiseOverlayRenderer

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojava.bio.gui.sequence.PairwiseOverlayRenderer

All Implemented Interfaces:

Serializable, PairwiseSequenceRenderer, Changeable

public class PairwiseOverlayRenderer
extends AbstractChangeable
implements PairwiseSequenceRenderer, Serializable

PairwiseOverlayRenderer allows a list of other PairwiseSequenceRenderers to superimpose their output. Operations on the child renderers (rendering, event handling) are carried out in the order in which they were added.

Since:

1.2

Author:

Keith James, Matthew Pocock

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.gui.sequence.PairwiseSequenceRenderer

PairwiseSequenceRenderer.PairwiseRendererForwarder

Field Summary

Fields

Modifier and Type	Field and Description
static ChangeType	RENDERERS Constant RENDERERS indicating a change to the renderers handled by the overlay.

Constructor Summary

Constructors

Constructor and Description
PairwiseOverlayRenderer() Creates a new, empty PairwiseOverlayRenderer.

Method Summary

Methods

Modifier and Type	Method and Description
protected void	_addRenderer(PairwiseSequenceRenderer renderer)
protected void	_removeRenderer(PairwiseSequenceRenderer renderer)
void	addRenderer(PairwiseSequenceRenderer renderer) addRenderer adds a renderer.
void	clearRenderers() clearRenderers removes all the renderers.
protected ChangeSupport	getChangeSupport(ChangeType ct) Called to retrieve the ChangeSupport for this object.
void	paint(Graphics2D g2, PairwiseRenderContext context) paint applies all renderers in the order in which they were added.
SequenceViewerEvent	processMouseEvent(PairwiseRenderContext context, MouseEvent me, List path) processMouseEvent produces a SequenceViewerEvent in response to a mouse gesture.
void	removeRenderer(PairwiseSequenceRenderer renderer) removeRenderer removes a renderer.

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

RENDERERS

public static final ChangeType RENDERERS

Constant RENDERERS indicating a change to the renderers handled by the overlay.

Constructor Detail

PairwiseOverlayRenderer

public PairwiseOverlayRenderer()

Creates a new, empty PairwiseOverlayRenderer.

Method Detail

addRenderer

public void addRenderer(PairwiseSequenceRenderer renderer)
                 throws ChangeVetoException

addRenderer adds a renderer.

Parameters:

renderer - a PairwiseSequenceRenderer.

Throws:

ChangeVetoException - if an error occurs.

removeRenderer

public void removeRenderer(PairwiseSequenceRenderer renderer)
                    throws ChangeVetoException

removeRenderer removes a renderer.

Parameters:

renderer - a PairwiseSequenceRenderer.

Throws:

ChangeVetoException - if an error occurs.

clearRenderers

public void clearRenderers()
                    throws ChangeVetoException

clearRenderers removes all the renderers.

Throws:

ChangeVetoException - if an error occurs.

paint

public void paint(Graphics2D g2,
         PairwiseRenderContext context)

paint applies all renderers in the order in which they were added.

Specified by:

paint in interface PairwiseSequenceRenderer

Parameters:

g2 - a Graphics2D.

context - a PairwiseRenderContext.

getChangeSupport

protected ChangeSupport getChangeSupport(ChangeType ct)

Description copied from class: AbstractChangeable

Called to retrieve the ChangeSupport for this object.

Your implementation of this method should have the following structure:

 ChangeSupport cs = super.getChangeSupport(ct);

 if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) {
   someForwarder = new ChangeForwarder(...

   this.stateVariable.addChangeListener(someForwarder, VariableInterface.AChange);
 }

 return cs;
 

It is usual for the forwarding listeners (someForwarder in this example) to be transient and lazily instantiated. Be sure to register & unregister the forwarder in the code that does the ChangeEvent handling in setter methods.

Overrides:

getChangeSupport in class AbstractChangeable

processMouseEvent

public SequenceViewerEvent processMouseEvent(PairwiseRenderContext context,
                                    MouseEvent me,
                                    List path)

processMouseEvent produces a SequenceViewerEvent in response to a mouse gesture. The list of renderers are probed in the order in which they were added and the first renderer to accept the event will return.

Specified by:

processMouseEvent in interface PairwiseSequenceRenderer

Parameters:

context - a PairwiseRenderContext.

me - a MouseEvent that caused the request.

path - a List of PairwiseSequenceRenderer instances passed through so far.

Returns:

a SequenceViewerEvent encapsulating the mouse gesture.

_addRenderer

protected void _addRenderer(PairwiseSequenceRenderer renderer)

_removeRenderer

protected void _removeRenderer(PairwiseSequenceRenderer renderer)