org.biojava.bio.gui.sequence

Class PeptideDigestRenderer

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojava.bio.gui.sequence.MultiLineRenderer

org.biojava.bio.gui.sequence.AbstractPeptideDigestRenderer

org.biojava.bio.gui.sequence.PeptideDigestRenderer

All Implemented Interfaces:

Serializable, SequenceRenderer, Changeable

public class PeptideDigestRenderer
extends AbstractPeptideDigestRenderer

A concrete AbstractPeptideDigestRenderer. The features matching the given FeatureFilter are rendered as blue arrows.

Since:

1.5

Author:

Mark Southern

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.gui.sequence.SequenceRenderer

SequenceRenderer.RendererForwarder

Field Summary

Fields

Modifier and Type	Field and Description
static ChangeType	DIGEST

Fields inherited from class org.biojava.bio.gui.sequence.AbstractPeptideDigestRenderer

LANE

Fields inherited from class org.biojava.bio.gui.sequence.MultiLineRenderer

renderers, RENDERERS

Constructor Summary

Constructors

Constructor and Description
PeptideDigestRenderer(FeatureSource source)
PeptideDigestRenderer(FeatureSource source, FeatureFilter filter)
PeptideDigestRenderer(FeatureSource source, FeatureFilter filter, int distanceBetweenFeatures)

Method Summary

Methods

Modifier and Type	Method and Description
FeatureRenderer	createRenderer(int lane)
Paint	getDefaultPaint()
void	setDefaultPaint(Paint p)

Methods inherited from class org.biojava.bio.gui.sequence.AbstractPeptideDigestRenderer

doRefreshRenderers, doSortPeptides, getDistanceBetweenFeatures, getFeatureSource, getFilter, setDistanceBetweenFeatures, setFeatureSource, setFilter, sortPeptidesIntoLanes

Methods inherited from class org.biojava.bio.gui.sequence.MultiLineRenderer

_addRenderer, _removeRenderer, addRenderer, clearRenderers, getChangeSupport, getDepth, getMinimumLeader, getMinimumTrailer, paint, processMouseEvent, removeRenderer

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DIGEST

public static final ChangeType DIGEST

Constructor Detail

PeptideDigestRenderer

public PeptideDigestRenderer(FeatureSource source)

PeptideDigestRenderer

public PeptideDigestRenderer(FeatureSource source,
                     FeatureFilter filter)

PeptideDigestRenderer

public PeptideDigestRenderer(FeatureSource source,
                     FeatureFilter filter,
                     int distanceBetweenFeatures)

Method Detail

setDefaultPaint

public void setDefaultPaint(Paint p)

getDefaultPaint

public Paint getDefaultPaint()

createRenderer

public FeatureRenderer createRenderer(int lane)

Specified by:

createRenderer in class AbstractPeptideDigestRenderer