org.biojava.bio.molbio

Class DNAComposition

java.lang.Object

org.biojava.bio.molbio.Composition

org.biojava.bio.molbio.DNAComposition

public class DNAComposition
extends Composition

Computes composition statistics about a DNA SymbolList.

Since:

1.6

Author:

Mark Schreiber

Constructor Summary

Constructors

Constructor and Description
DNAComposition()

Method Summary

Methods

Modifier and Type	Method and Description
double	getA() Get the relative compositon of 'A'.
double	getC() Get the relative compositon of 'C'.
double	getG() Get the relative compositon of 'G'.
double	getT() Get the relative compositon of 'T'.

Methods inherited from class org.biojava.bio.molbio.Composition

getDistribution, setSymbolList

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DNAComposition

public DNAComposition()

Method Detail

getA

public double getA()

Get the relative compositon of 'A'.

Returns:

between 0.0 and 1.0

getC

public double getC()

Get the relative compositon of 'C'.

Returns:

between 0.0 and 1.0

getG

public double getG()

Get the relative compositon of 'G'.

Returns:

between 0.0 and 1.0

getT

public double getT()

Get the relative compositon of 'T'.

Returns:

between 0.0 and 1.0