Uses of Class
org.biojava.bio.molbio.RestrictionEnzyme

Packages that use RestrictionEnzyme

Package	Description
org.biojava.bio.molbio	The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR.
org.biojava.bio.seq.impl	Standard in-memory implementations of Sequence and Feature.

Uses of RestrictionEnzyme in org.biojava.bio.molbio

Fields in org.biojava.bio.molbio declared as RestrictionEnzyme

Modifier and Type	Field and Description
RestrictionEnzyme	RestrictionSite.Template.enzyme enzyme RestrictionEnzyme field.

Methods in org.biojava.bio.molbio that return RestrictionEnzyme

Modifier and Type	Method and Description
RestrictionEnzyme	RestrictionSite.getEnzyme() getEnzyme returns the enzyme which cuts at this site.
static RestrictionEnzyme	RestrictionEnzymeManager.getEnzyme(String name) getEnzyme returns an enzyme by name.
RestrictionEnzyme	RestrictionEnzyme.getPrototype() The prototype is a RestrictionEnzyme that represents a set of isoshizomers.

Methods in org.biojava.bio.molbio with parameters of type RestrictionEnzyme

Modifier and Type	Method and Description
void	RestrictionMapper.addEnzyme(RestrictionEnzyme enzyme) addEnzyme adds an enzyme to be searched for in the Sequence.
static Annotation	RestrictionEnzymeManager.getAnnotation(RestrictionEnzyme enzyme) getAnnotation returns an immutable, static annotation describing the enzyme.
static Pattern[]	RestrictionEnzymeManager.getPatterns(RestrictionEnzyme enzyme) getPatterns returns two Pattern objects for an enzyme, one matches the forward strand and one the reverse.
static String	RestrictionEnzymeManager.getSuppliers(RestrictionEnzyme enzyme) getSuppliers returns a string describing the suppliers of this enzyme according to REBASE encoding for commercial sources or an empty String if the enzyme is not commecially available.
static void	RestrictionEnzymeManager.register(RestrictionEnzyme enzyme, Set isoschizomers) register regisiters a new RestrictionEnzyme with the manager.
void	RestrictionMapper.removeEnzyme(RestrictionEnzyme enzyme) removeEnzyme removes an enzyme from those to be searched for in the Sequence.
void	RestrictionEnzyme.setProtype(RestrictionEnzyme proto) Set the prototype of this RestrictionEnzyme.

Uses of RestrictionEnzyme in org.biojava.bio.seq.impl

Methods in org.biojava.bio.seq.impl that return RestrictionEnzyme

Modifier and Type	Method and Description
RestrictionEnzyme	SimpleRestrictionSite.getEnzyme()