org.biojava.bio.program.blast2html

Class NcbiDatabaseURLGenerator

java.lang.Object

org.biojava.bio.program.blast2html.NcbiDatabaseURLGenerator

All Implemented Interfaces:

DatabaseURLGenerator

public class NcbiDatabaseURLGenerator
extends Object
implements DatabaseURLGenerator

Simple URL generator for Entrez at the NCBI. Primary author - Colin Hardman (CAT) Other authors - Tim Dilks (CAT) Simon Brocklehurst (CAT) Stuart Johnston (CAT) Lawerence Bower (CAT) Derek Crockford (CAT) Neil Benn (CAT) Copyright 2001 Cambridge Antibody Technology Group plc. This code released to the biojava project, May 2001 under the LGPL license.

Version:

1.0

Author:

Cambridge Antibody Technology Group plc

Constructor Summary

Constructors

Constructor and Description
NcbiDatabaseURLGenerator()

Method Summary

Methods

Modifier and Type	Method and Description
String	toLink(String poID, Properties poProperties) Returns a full retrieve item anchor for the given database id.
String	toURL(String poID, Properties poProperties) Returns a string representation of a URL to the specified ID.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NcbiDatabaseURLGenerator

public NcbiDatabaseURLGenerator()

Method Detail

toURL

public String toURL(String poID,
           Properties poProperties)

Description copied from interface: DatabaseURLGenerator

Returns a string representation of a URL to the specified ID. Used in summary section.

Specified by:

toURL in interface DatabaseURLGenerator

Parameters:

poID - a database ID

poProperties - Properties - any options needed

Returns:

a String value

toLink

public String toLink(String poID,
            Properties poProperties)

Description copied from interface: DatabaseURLGenerator

Returns a full retrieve item anchor for the given database id. Used in detail section.

Specified by:

toLink in interface DatabaseURLGenerator

Parameters:

poID - a String value

poProperties - a Properties value

Returns:

a String value