Uses of Class
org.biojava.bio.program.fastq.FastqVariant

Packages that use FastqVariant

Package	Description
org.biojava.bio.program.fastq	FASTQ and variants sequence format I/O.

Uses of FastqVariant in org.biojava.bio.program.fastq

Fields in org.biojava.bio.program.fastq declared as FastqVariant

Modifier and Type	Field and Description
static FastqVariant	FastqBuilder.DEFAULT_VARIANT Default FASTQ sequence format variant, FastqVariant.FASTQ_SANGER.

Methods in org.biojava.bio.program.fastq that return FastqVariant

Modifier and Type	Method and Description
protected FastqVariant	SolexaFastqReader.getVariant() Return the FASTQ sequence format variant for this reader.
protected FastqVariant	SangerFastqReader.getVariant() Return the FASTQ sequence format variant for this reader.
protected FastqVariant	IlluminaFastqReader.getVariant() Return the FASTQ sequence format variant for this reader.
FastqVariant	Fastq.getVariant() Return the FASTQ sequence format variant for this FASTQ formatted sequence.
static FastqVariant	FastqVariant.parseFastqVariant(String name) Return the FASTQ sequence format variant with the specified name, if any.
static FastqVariant	FastqVariant.valueOf(String name) Returns the enum constant of this type with the specified name.
static FastqVariant[]	FastqVariant.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.biojava.bio.program.fastq with parameters of type FastqVariant

Modifier and Type	Method and Description
FastqBuilder	FastqBuilder.withVariant(FastqVariant variant) Return this FASTQ formatted sequence builder configured with the specified FASTQ sequence format variant.