org.biojava.bio.program.gff

Interface GFFRecordFilter

All Known Implementing Classes:

GFFRecordFilter.AcceptAll, GFFRecordFilter.FeatureFilter, GFFRecordFilter.FrameFilter, GFFRecordFilter.NotFilter, GFFRecordFilter.SequenceFilter, GFFRecordFilter.SourceFilter, GFFRecordFilter.StrandFilter

public interface GFFRecordFilter

A filter that will accept or reject a GFFEntry.

Author:

Matthew Pocock, Keith James (docs)

Nested Class Summary

Nested Classes

Modifier and Type	Interface and Description
static class	GFFRecordFilter.AcceptAll Implementation of GFFRecordFilter that accepts everything.
static class	GFFRecordFilter.FeatureFilter Implementation of GFFRecordFilter that accepts records based upon the feature field.
static class	GFFRecordFilter.FrameFilter
static class	GFFRecordFilter.NotFilter
static class	GFFRecordFilter.SequenceFilter Implementation of GFFRecordFilter that accepts records based upon the sequence name.
static class	GFFRecordFilter.SourceFilter Implementation of GFFRecordFilter that accepts records based upon the source field.
static class	GFFRecordFilter.StrandFilter

Field Summary

Fields

Modifier and Type	Field and Description
static GFFRecordFilter	ACCEPT_ALL A GFFRecordFilter that accepts everything.

Method Summary

Methods

Modifier and Type	Method and Description
boolean	accept(GFFRecord record) Return whether or not to accept record.

Field Detail

ACCEPT_ALL

static final GFFRecordFilter ACCEPT_ALL

A GFFRecordFilter that accepts everything.

Method Detail

accept

boolean accept(GFFRecord record)

Return whether or not to accept record.

Parameters:

record - the GFFRecord to filter

Returns:

true if record should be accepted or false otherwise