Uses of Class
org.biojava.bio.program.gff.IgnoreRecordException

Packages that use IgnoreRecordException

Package	Description
org.biojava.bio.program.gff	GFF manipulation.
org.biojava.bio.program.gff3	Support for reading and writing GFF3.

Uses of IgnoreRecordException in org.biojava.bio.program.gff

Methods in org.biojava.bio.program.gff that throw IgnoreRecordException

Modifier and Type	Method and Description
protected GFFRecord	GFFParser.createRecord(GFFDocumentHandler handler, List aList, String rest, String comment) Actually turns a list of tokens, some value string and a comment into a GFFRecord and informs handler.
int	GFFErrorHandler.invalidEnd(String token) The `end' field of the GFF entry was not a valid value.
int	GFFErrorHandler.SkipRecordErrorHandler.invalidEnd(String token)
int	GFFErrorHandler.invalidFrame(String token) The `frame' field of the GFF entry was not a valid value.
int	GFFErrorHandler.SkipRecordErrorHandler.invalidFrame(String token)
double	GFFErrorHandler.invalidScore(String token) The `score' field of the GFF entry was not a valid value.
double	GFFErrorHandler.SkipRecordErrorHandler.invalidScore(String token)
int	GFFErrorHandler.invalidStart(String token) The `start' field of the GFF entry was not a valid value.
int	GFFErrorHandler.SkipRecordErrorHandler.invalidStart(String token)
StrandedFeature.Strand	GFFErrorHandler.invalidStrand(String token) The `strand' field of the GFF entry was not a valid value.
StrandedFeature.Strand	GFFErrorHandler.SkipRecordErrorHandler.invalidStrand(String token)

Uses of IgnoreRecordException in org.biojava.bio.program.gff3

Methods in org.biojava.bio.program.gff3 that throw IgnoreRecordException

Modifier and Type	Method and Description
protected GFF3Record	GFF3Parser.createRecord(GFF3DocumentHandler handler, List aList, String rest, String comment, Ontology ontology, Ontology fallBack) Actually turns a list of tokens, some value string and a comment into a GFF3Record and informs handler.