org.biojava.bio.program.homologene

Class AbstractOrthoPairCollection

java.lang.Object

org.biojava.bio.program.homologene.AbstractOrthoPairCollection

All Implemented Interfaces:

OrthoPairCollection

Direct Known Subclasses:

SimpleOrthoPairCollection

public abstract class AbstractOrthoPairCollection
extends Object
implements OrthoPairCollection

An abstract implementation of the OrthoPairCollection interface. Its primary role is to implement the filter() method.i

Author:

David Huen

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.program.homologene.OrthoPairCollection

OrthoPairCollection.Iterator

Constructor Summary

Constructors

Constructor and Description
AbstractOrthoPairCollection()

Method Summary

Methods

Modifier and Type	Method and Description
abstract void	add(OrthoPairSet group)
abstract boolean	contains(OrthoPairSet group)
OrthoPairCollection	filter(OrthoPairSetFilter filters)
abstract boolean	isEmpty()
abstract OrthoPairCollection.Iterator	iterator()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractOrthoPairCollection

public AbstractOrthoPairCollection()

Method Detail

add

public abstract void add(OrthoPairSet group)

Specified by:

add in interface OrthoPairCollection

contains

public abstract boolean contains(OrthoPairSet group)

Specified by:

contains in interface OrthoPairCollection

isEmpty

public abstract boolean isEmpty()

Specified by:

isEmpty in interface OrthoPairCollection

iterator

public abstract OrthoPairCollection.Iterator iterator()

Specified by:

iterator in interface OrthoPairCollection

filter

public OrthoPairCollection filter(OrthoPairSetFilter filters)

Specified by:

filter in interface OrthoPairCollection