org.biojava.bio.program.homologene

Interface Orthologue

All Known Implementing Classes:

SimpleOrthologue

public interface Orthologue

this entry contains data about the orthologue.

Method Summary

Methods

Modifier and Type	Method and Description
String	getAccession() get the Accession ID associated with this orthologue.
String	getHomologeneID() get the Homologene ID.
String	getLocusID() get the locus ID associated with this orthologue.
Taxon	getTaxon() return the Taxon associated with this orthologue
int	getTaxonID() a convenience method to return the TaxonID for thsi orhtologue.
String	getTitle() return the title used by Genbank for this protein
void	setTitle(String title)

Method Detail

getTitle

String getTitle()

return the title used by Genbank for this protein

getTaxon

Taxon getTaxon()

return the Taxon associated with this orthologue

getTaxonID

int getTaxonID()

a convenience method to return the TaxonID for thsi orhtologue.

getLocusID

String getLocusID()

get the locus ID associated with this orthologue. It can be null.

getHomologeneID

String getHomologeneID()

get the Homologene ID. This is unique and always defined.

getAccession

String getAccession()

get the Accession ID associated with this orthologue.

setTitle

void setTitle(String title)