Uses of Class
org.biojava.bio.program.phred.PhredSequence

Packages that use PhredSequence

Package	Description
org.biojava.bio.program.fastq	FASTQ and variants sequence format I/O.
org.biojava.bio.program.phred	Parser for Phred output

Uses of PhredSequence in org.biojava.bio.program.fastq

Methods in org.biojava.bio.program.fastq that return PhredSequence

Modifier and Type	Method and Description
static PhredSequence	FastqTools.createPhredSequence(Fastq fastq) Create and return a new PhredSequence from the specified FASTQ formatted sequence.

Uses of PhredSequence in org.biojava.bio.program.phred

Methods in org.biojava.bio.program.phred with parameters of type PhredSequence

Modifier and Type	Method and Description
static Distribution[]	PhredTools.phredToDistArray(PhredSequence s) Converts a Phred sequence to an array of distributions.