Uses of Interface
org.biojava.bio.program.ssaha.DataStore

Packages that use DataStore

Package	Description
org.biojava.bio.program.ssaha	SSAHA sequence searching API.

Uses of DataStore in org.biojava.bio.program.ssaha

Classes in org.biojava.bio.program.ssaha that implement DataStore

Modifier and Type	Class and Description
class	CompactedDataStore An implementation of DataStore that will map onto a file using the NIO constructs.

Methods in org.biojava.bio.program.ssaha that return DataStore

Modifier and Type	Method and Description
DataStore	NIODataStoreFactory.buildDataStore(File storeFile, SequenceDB seqDB, Packing packing, int wordLength, int threshold)
DataStore	MappedDataStoreFactory.buildDataStore(File storeFile, SequenceDB seqDB, Packing packing, int wordLength, int threshold)
DataStore	DataStoreFactory.buildDataStore(File storeFile, SequenceDB seqDB, Packing packing, int wordLength, int threshold) Build a new DataStore.
DataStore	CompactedDataStoreFactory.buildDataStore(File storeFile, SequenceDB seqDB, Packing packing, int wordLength, int threshold)
DataStore	CompactedDataStoreFactory.buildDataStore(File storeFile, SequenceStreamer streamer, Packing packing, int wordLength, int stepSize, int threshold)
DataStore	NIODataStoreFactory.getDataStore(File storeFile)
DataStore	MappedDataStoreFactory.getDataStore(File storeFile)
DataStore	DataStoreFactory.getDataStore(File storeFile) Get a pre-built data store associated with a file.
DataStore	CompactedDataStoreFactory.getDataStore(File storeFile)