org.biojava.bio.program.ssbind

Class HSPStAXHandler

java.lang.Object

org.biojava.utils.stax.StAXContentHandlerBase

org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

org.biojava.bio.program.ssbind.HSPStAXHandler

All Implemented Interfaces:

StAXContentHandler

public class HSPStAXHandler
extends SeqSimilarityStAXHandler

HSPStAXHandler handles the HSP element of BioJava BlastLike XML.

Since:

1.3

Author:

Keith James

Field Summary

Fields

Modifier and Type	Field and Description
static StAXHandlerFactory	HSP_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

ssContext

Method Summary

Methods

Modifier and Type	Method and Description
protected void	handleEndElement(String nsURI, String localName, String qName)
protected void	handleStartElement(String nsURI, String localName, String qName, Attributes attrs)

Methods inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

addHandler, endElement, startElement

Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

HSP_HANDLER_FACTORY

public static final StAXHandlerFactory HSP_HANDLER_FACTORY

Method Detail

handleStartElement

protected void handleStartElement(String nsURI,
                      String localName,
                      String qName,
                      Attributes attrs)
                           throws SAXException

Overrides:

handleStartElement in class SeqSimilarityStAXHandler

Throws:

SAXException

handleEndElement

protected void handleEndElement(String nsURI,
                    String localName,
                    String qName)
                         throws SAXException

Overrides:

handleEndElement in class SeqSimilarityStAXHandler

Throws:

SAXException