org.biojava.bio.search

Interface SearchBuilder

All Superinterfaces:

SearchContentHandler

All Known Implementing Classes:

BlastLikeSearchBuilder

public interface SearchBuilder
extends SearchContentHandler

The SearchBuilder interface is to be used by objects which accumulate state via a SearchContentHandler and then construct a SeqSimilaritySearchResult object.

Since:

1.1

Author:

Keith James

See Also:

SearchContentHandler

Method Summary

Methods

Modifier and Type	Method and Description
SeqSimilaritySearchResult	makeSearchResult() The makeSearchResult method returns a SeqSimilaritySearchResult instance created from accumulated data.

Methods inherited from interface org.biojava.bio.search.SearchContentHandler

addHitProperty, addSearchProperty, addSubHitProperty, endHeader, endHit, endSearch, endSubHit, getMoreSearches, setDatabaseID, setMoreSearches, setQueryID, startHeader, startHit, startSearch, startSubHit

Method Detail

makeSearchResult

SeqSimilaritySearchResult makeSearchResult()
                                           throws BioException

The makeSearchResult method returns a SeqSimilaritySearchResult instance created from accumulated data.

Returns:

a SeqSimilaritySearchResult.

Throws:

BioException - if an error occurs.