Package | Description |
---|---|
org.biojava.bio.molbio |
The classes and interfaces in this package cover common molecular
biological techniques such as restriction digests and PCR.
|
org.biojava.bio.program.xff |
Event-driven parsing system for the Extensible Feature Format (XFF).
|
org.biojava.bio.seq |
Classes and interfaces for defining biological sequences and informatics
objects.
|
org.biojava.bio.seq.homol |
The classes and interfaces for defining sequence similarity and
honology.
|
org.biojava.bio.seq.impl |
Standard in-memory implementations of
Sequence and
Feature . |
Modifier and Type | Class and Description |
---|---|
static class |
RestrictionSite.Template
Template for construction of
RestrictionSite s. |
Modifier and Type | Method and Description |
---|---|
protected StrandedFeature.Template |
StrandedFeatureHandler.getStrandedFeatureTemplate() |
Modifier and Type | Class and Description |
---|---|
static class |
ComponentFeature.Template
Template for constructing a new ComponentFeature.
|
static class |
FramedFeature.Template |
static class |
RemoteFeature.Template |
Modifier and Type | Class and Description |
---|---|
static class |
HomologyFeature.Template |
static class |
SimilarityPairFeature.Template
Template for construction of
SimilarityPairFeature s. |
Modifier and Type | Method and Description |
---|---|
protected void |
SimpleStrandedFeature.fillTemplate(StrandedFeature.Template ft) |
Constructor and Description |
---|
SimpleStrandedFeature(Sequence sourceSeq,
FeatureHolder parent,
StrandedFeature.Template template) |
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