org.biojava.bio.seq.impl

Class SimpleRemoteFeature.DBResolver

java.lang.Object

org.biojava.bio.seq.impl.SimpleRemoteFeature.DBResolver

All Implemented Interfaces:

RemoteFeature.Resolver

Enclosing class:

SimpleRemoteFeature

public static class SimpleRemoteFeature.DBResolver
extends Object
implements RemoteFeature.Resolver

Constructor Summary

Constructors

Constructor and Description
SimpleRemoteFeature.DBResolver(SequenceDB seqDB)

Method Summary

Methods

Modifier and Type	Method and Description
SequenceDB	getSeqDB()
Feature	resolve(RemoteFeature rFeat) Resolve rFeat.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleRemoteFeature.DBResolver

public SimpleRemoteFeature.DBResolver(SequenceDB seqDB)

Method Detail

getSeqDB

public SequenceDB getSeqDB()

resolve

public Feature resolve(RemoteFeature rFeat)
                throws BioException

Description copied from interface: RemoteFeature.Resolver

Resolve rFeat.

This method returns a Feature that represents the RemoteFeature rFeat on some Sequence where all of the Regions can be represented localy. This may be an assembly of the parent sequence of rFeat and each of the Sequences that have IDs listed in the Region list of rFeat.

Specified by:

resolve in interface RemoteFeature.Resolver

Parameters:

rFeat - the RemoteFeature to resolve

Returns:

a Feature on some other Seqence where each Region of rFeat is resolved into a local Location

Throws:

BioException