org.biojava.bio.seq.io.agave

Class AGAVEMatchAlignPropHandler

java.lang.Object

org.biojava.bio.seq.io.agave.StAXContentHandlerBase

org.biojava.bio.seq.io.agave.StAXPropertyHandler

org.biojava.bio.seq.io.agave.AGAVEMatchAlignPropHandler

All Implemented Interfaces:

StAXContentHandler

public class AGAVEMatchAlignPropHandler
extends StAXPropertyHandler

Deals with match_align

Author:

Hanning Ni Doubletwist Inc

Field Summary

Fields

Modifier and Type	Field and Description
static StAXHandlerFactory	AGAVE_MATCH_ALIGN_PROP_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler

featureListener, staxenv

Method Summary

Methods

Modifier and Type	Method and Description
void	characters(char[] ch, int start, int length) Signal a span of character data in the XML input.

Methods inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler

addHandler, endElement, endElementHandler, getHandlerStackIterator, setHandlerCharacteristics, setProperty, startElement, startElementHandler

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase

endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AGAVE_MATCH_ALIGN_PROP_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_MATCH_ALIGN_PROP_HANDLER_FACTORY

Method Detail

characters

public void characters(char[] ch,
              int start,
              int length)
                throws SAXException

Description copied from class: StAXContentHandlerBase

Signal a span of character data in the XML input.

Specified by:

characters in interface StAXContentHandler

Overrides:

characters in class StAXContentHandlerBase

Parameters:

ch - an array of characters

start - index of the first significant character for this event.

length - number of characters significant to this event.

Throws:

SAXException