org.biojava.bio.seq.io.agave

Class AGAVEMatchRegionPropHandler

java.lang.Object

org.biojava.bio.seq.io.agave.StAXContentHandlerBase

org.biojava.bio.seq.io.agave.StAXPropertyHandler

org.biojava.bio.seq.io.agave.AGAVEMatchRegionPropHandler

All Implemented Interfaces:

AGAVEDbIdCallbackItf, AGAVEEvidenceCallbackItf, StAXContentHandler

public class AGAVEMatchRegionPropHandler
extends StAXPropertyHandler
implements AGAVEDbIdCallbackItf, AGAVEEvidenceCallbackItf

Deals with match_region

Author:

Hanning Ni Doubletwist Inc

Field Summary

Fields

Modifier and Type	Field and Description
static StAXHandlerFactory	AGAVE_MATCH_REGION_PROP_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler

featureListener, staxenv

Method Summary

Methods

Modifier and Type	Method and Description
void	addDbId(AGAVEDbId id)
void	addElementId(String id)
void	endElementHandler(String nsURI, String localName, String qName, StAXContentHandler handler) Element specific exit handler Subclass to do anything useful.
void	startElementHandler(String nsURI, String localName, String qName, Attributes attrs) Element-specific handler.

Methods inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler

addHandler, endElement, getHandlerStackIterator, setHandlerCharacteristics, setProperty, startElement

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AGAVE_MATCH_REGION_PROP_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_MATCH_REGION_PROP_HANDLER_FACTORY

Method Detail

addDbId

public void addDbId(AGAVEDbId id)

Specified by:

addDbId in interface AGAVEDbIdCallbackItf

addElementId

public void addElementId(String id)

Specified by:

addElementId in interface AGAVEEvidenceCallbackItf

startElementHandler

public void startElementHandler(String nsURI,
                       String localName,
                       String qName,
                       Attributes attrs)
                         throws SAXException

Description copied from class: StAXPropertyHandler

Element-specific handler. Subclass this to do something useful!

Overrides:

startElementHandler in class StAXPropertyHandler

Throws:

SAXException

endElementHandler

public void endElementHandler(String nsURI,
                     String localName,
                     String qName,
                     StAXContentHandler handler)
                       throws SAXException

Description copied from class: StAXPropertyHandler

Element specific exit handler Subclass to do anything useful.

Overrides:

endElementHandler in class StAXPropertyHandler

Throws:

SAXException