Uses of Class
org.biojava.bio.seq.io.agave.StAXFeatureHandler

Packages that use StAXFeatureHandler

Package	Description
org.biojava.bio.seq.io.agave	Classes for converting between AGAVE XML and BioJava objects.

Uses of StAXFeatureHandler in org.biojava.bio.seq.io.agave

Subclasses of StAXFeatureHandler in org.biojava.bio.seq.io.agave

Modifier and Type	Class and Description
class	AGAVEAssemblyHandler
class	AGAVEBioSeqHandler Handles the AGAVE <bio_sequence> element
class	AGAVEBioSequenceHandler Handles the AGAVE <bio_sequence> element
class	AGAVECdsHandler Handles the AGAVE <cds> element
class	AGAVEChromosomeHandler Handles the AGAVE <chromosome> element
class	AGAVEClassificationHandler
class	AGAVECompResultHandler
class	AGAVEComputationHandler
class	AGAVEContigHandler Handles the AGAVE <contig> element
class	AGAVEEvidenceHandler
class	AGAVEFragmentOrderHandler
class	AGAVEFragmentOrientationHandler
class	AGAVEGeneHandler
class	AGAVEHandler Handles the root AGAVE element modified for agave format
class	AGAVEMrnaHandler Handles the AGAVE <mrna> element
class	AGAVEPredictedProteinHandler Handles the AGAVE <predicted_protein> element
class	AGAVEQueryRegionPropHandler
class	AGAVEResultGroupHandler
class	AGAVESeqFeatureHandler seq_feature
class	AGAVESeqMapHandler sequence_map
class	AGAVETranscriptHandler transcript
class	AGAVEUnorderedFragmentsHandler unordered_fragments

Fields in org.biojava.bio.seq.io.agave declared as StAXFeatureHandler

Modifier and Type	Field and Description
protected StAXFeatureHandler	StAXPropertyHandler.staxenv
protected StAXFeatureHandler	StAXFeatureHandler.staxenv

Methods in org.biojava.bio.seq.io.agave with parameters of type StAXFeatureHandler

Modifier and Type	Method and Description
StAXContentHandler	StAXHandlerFactory.getHandler(StAXFeatureHandler staxenv) Return a suitable StAX content handler.