Uses of Interface
org.biojava.bio.seq.io.StreamParser

Packages that use StreamParser

Package	Description
org.biojava.bio.seq.io	Classes and interfaces for processing and producing flat-file representations of sequences.
org.biojava.bio.seq.io.game	Event-driven parsing system for the Gene Annotation Markup Elements (GAME).
org.biojava.bio.symbol	Representation of the Symbols that make up a sequence, and locations within them.

Uses of StreamParser in org.biojava.bio.seq.io

Methods in org.biojava.bio.seq.io that return StreamParser

Modifier and Type	Method and Description
StreamParser	WordTokenization.parseStream(SeqIOListener siol)
StreamParser	SymbolTokenization.parseStream(SeqIOListener listener) Return an object which can parse an arbitrary character stream into symbols.
StreamParser	CharacterTokenization.parseStream(SeqIOListener listener)
StreamParser	AlternateTokenization.parseStream(SeqIOListener listener) Will throw an exception.

Methods in org.biojava.bio.seq.io with parameters of type StreamParser

Modifier and Type	Method and Description
protected void	EmblLikeFormat.processSequenceLine(String line, StreamParser parser) Deprecated. Dispatch symbol data from SQ-block line of an EMBL-like file.

Uses of StreamParser in org.biojava.bio.seq.io.game

Methods in org.biojava.bio.seq.io.game with parameters of type StreamParser

Modifier and Type	Method and Description
void	SequenceContentHandlerBase.setStreamParser(StreamParser parser) assign a StreamParser object to instance.

Uses of StreamParser in org.biojava.bio.symbol

Methods in org.biojava.bio.symbol that return StreamParser

Modifier and Type	Method and Description
StreamParser	SoftMaskedAlphabet.CaseSensitiveTokenization.parseStream(SeqIOListener l) The current implementation only supports character parsing.