Uses of Interface
org.biojava.bio.seq.projection.ProjectionContext

Packages that use ProjectionContext

Package	Description
org.biojava.bio.seq.impl	Standard in-memory implementations of Sequence and Feature.
org.biojava.bio.seq.projection	Code for projecting Feature objects and systematically altering their properties.

Uses of ProjectionContext in org.biojava.bio.seq.impl

Classes in org.biojava.bio.seq.impl that implement ProjectionContext

Modifier and Type	Class and Description
class	SimpleGappedSequence.GappedContext
static class	SubSequence.SubProjectedFeatureContext TargetContext that implements the mapping between the parent sequence and this sub-sequence.

Uses of ProjectionContext in org.biojava.bio.seq.projection

Classes in org.biojava.bio.seq.projection that implement ProjectionContext

Modifier and Type	Class and Description
class	ReparentContext A good base class to implement ProjectionContext from.
class	TranslateFlipContext A ProjectionContext that translates and optionaly flips features.

Methods in org.biojava.bio.seq.projection that return ProjectionContext

Modifier and Type	Method and Description
ProjectionContext	ProjectedFeatureHolder.getContext()
ProjectionContext	Projection.getProjectionContext()
ProjectionContext	ProjectedFeature.getProjectionContext()

Methods in org.biojava.bio.seq.projection with parameters of type ProjectionContext

Modifier and Type	Method and Description
Feature	ProjectionEngine.projectFeature(Feature f, ProjectionContext ctx) Return a projection of Feature f into the system defined by a given ProjectionContext.
Feature.Template	ProjectionEngine.revertTemplate(Feature.Template templ, ProjectionContext ctxt) Revert a template so that it can be used on the original feature-space.
Feature.Template	ProjectionEngine.TemplateProjector.revertTemplate(ProjectionContext ctxt, Feature.Template projTempl)

Constructors in org.biojava.bio.seq.projection with parameters of type ProjectionContext

Constructor and Description
ProjectedFeature(Feature f, ProjectionContext ctx)
ProjectedFeatureHolder(ProjectionContext context)