org.biojava.bio.symbol

Class IllegalSymbolException

java.lang.Object

java.lang.Throwable

java.lang.Exception

org.biojava.bio.BioException

org.biojava.bio.symbol.IllegalSymbolException

All Implemented Interfaces:

Serializable

public class IllegalSymbolException
extends BioException

The exception to indicate that a symbol is not valid within a context.

The usual reason for throwing an IllegalSymbolException is that you are trying to add a symbol to a sequence with an alpabet that does not contain the symbol. This is the sequence/alphabet equivalent of a ClassCastException for objects.

Frequently, these excepions are actualy generated from Alphabet.validate.

Author:

Matthew Pocock

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
IllegalSymbolException(String message) Make the exception with a message.
IllegalSymbolException(Symbol sym, String message) Make the exception with a message and a symbol.
IllegalSymbolException(Throwable cause, String message)
IllegalSymbolException(Throwable cause, Symbol sym, String message)

Method Summary

Methods

Modifier and Type	Method and Description
Symbol	getSymbol() Retrieve the symbol that caused this exception, or null.

Methods inherited from class java.lang.Throwable

addSuppressed, fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, getSuppressed, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

IllegalSymbolException

public IllegalSymbolException(String message)

Make the exception with a message.

IllegalSymbolException

public IllegalSymbolException(Symbol sym,
                      String message)

Make the exception with a message and a symbol.

IllegalSymbolException

public IllegalSymbolException(Throwable cause,
                      String message)

IllegalSymbolException

public IllegalSymbolException(Throwable cause,
                      Symbol sym,
                      String message)

Method Detail

getSymbol

public Symbol getSymbol()

Retrieve the symbol that caused this exception, or null.