Uses of Class
org.biojava.bio.symbol.AbstractSymbolList

Packages that use AbstractSymbolList

Package	Description
org.biojava.bio.alignment	Classes to generate and describe sequence alignments.
org.biojava.bio.seq.impl	Standard in-memory implementations of Sequence and Feature.
org.biojava.bio.symbol	Representation of the Symbols that make up a sequence, and locations within them.

Uses of AbstractSymbolList in org.biojava.bio.alignment

Subclasses of AbstractSymbolList in org.biojava.bio.alignment

Modifier and Type	Class and Description
class	AbstractULAlignment
class	AbstractULAlignment.SubULAlignment
class	AlignmentPair This class stores the result of an alignment procedure that creates a pairwise alignment of two sequences.
class	FlexibleAlignment FlexibleAlignment is a class which implements UnequalLengthAlignment, ARAlignment and EditableAlignment It places no restriction on where any sequence can be in the alignment so there could be gaps in the alignment.
class	SimpleAlignment A simple implementation of an Alignment.

Uses of AbstractSymbolList in org.biojava.bio.seq.impl

Subclasses of AbstractSymbolList in org.biojava.bio.seq.impl

Modifier and Type	Class and Description
class	AssembledSymbolList Support class for applications which need to patch together sections of sequence into a single SymbolList.
class	NewAssembledSymbolList Support class for applications which need to patch together sections of sequence into a single SymbolList.
class	SimpleGappedSequence Simple implementation of GappedSequence.

Uses of AbstractSymbolList in org.biojava.bio.symbol

Subclasses of AbstractSymbolList in org.biojava.bio.symbol

Modifier and Type	Class and Description
class	ChunkedSymbolList SymbolList implementation using constant-size chunks.
class	DummySymbolList Symbol list which just consists of non-informative symbols.
class	PackedSymbolList A SymbolList that stores symbols as bit-patterns in an array of longs.
class	SimpleGappedSymbolList This implementation of GappedSymbolList wraps a SymbolList, allowing you to insert gaps.
class	SimpleSymbolList Basic implementation of SymbolList.