Uses of Interface
org.biojava.bio.symbol.AlphabetIndex

Packages that use AlphabetIndex

Package	Description
org.biojava.bio.dist	Probability distributions over Alphabets.
org.biojava.bio.symbol	Representation of the Symbols that make up a sequence, and locations within them.

Uses of AlphabetIndex in org.biojava.bio.dist

Constructors in org.biojava.bio.dist with parameters of type AlphabetIndex

Constructor and Description
IndexedCount(AlphabetIndex indexer) Get a new InexedCount for an alphabet indexer.

Uses of AlphabetIndex in org.biojava.bio.symbol

Methods in org.biojava.bio.symbol that return AlphabetIndex

Modifier and Type	Method and Description
static AlphabetIndex	AlphabetManager.getAlphabetIndex(FiniteAlphabet alpha) Get an indexer for a specified alphabet.
static AlphabetIndex	AlphabetManager.getAlphabetIndex(Symbol[] syms) Get an indexer for an array of symbols.