Uses of Interface
org.biojava.bio.symbol.SoftMaskedAlphabet.MaskingDetector

Packages that use SoftMaskedAlphabet.MaskingDetector

Package	Description
org.biojava.bio.symbol	Representation of the Symbols that make up a sequence, and locations within them.

Uses of SoftMaskedAlphabet.MaskingDetector in org.biojava.bio.symbol

Classes in org.biojava.bio.symbol that implement SoftMaskedAlphabet.MaskingDetector

Modifier and Type	Class and Description
static class	SoftMaskedAlphabet.MaskingDetector.DefaultMaskingDetector

Fields in org.biojava.bio.symbol declared as SoftMaskedAlphabet.MaskingDetector

Modifier and Type	Field and Description
static SoftMaskedAlphabet.MaskingDetector	SoftMaskedAlphabet.MaskingDetector.DEFAULT

Methods in org.biojava.bio.symbol that return SoftMaskedAlphabet.MaskingDetector

Modifier and Type	Method and Description
SoftMaskedAlphabet.MaskingDetector	SoftMaskedAlphabet.getMaskingDetector() Getter for the MaskingDetector

Methods in org.biojava.bio.symbol with parameters of type SoftMaskedAlphabet.MaskingDetector

Modifier and Type	Method and Description
static SoftMaskedAlphabet	SoftMaskedAlphabet.getInstance(FiniteAlphabet alphaToMask, SoftMaskedAlphabet.MaskingDetector maskingDetector) Creates a compound alphabet that is a hybrid of the alphabet that is to be soft masked and a binary alphabet that indicates if any Symbol is soft masked or not.