Uses of Interface
org.biojava.bio.symbol.TranslationTable

Packages that use TranslationTable

Package	Description
org.biojava.bio.symbol	Representation of the Symbols that make up a sequence, and locations within them.

Uses of TranslationTable in org.biojava.bio.symbol

Subinterfaces of TranslationTable in org.biojava.bio.symbol

Modifier and Type	Interface and Description
interface	ManyToOneTranslationTable A translation table that will handle the many-to-one mappings that you see, for example, with genetic codes.
interface	ReversibleTranslationTable A translation table that can also translate from the target to source alphabet.

Classes in org.biojava.bio.symbol that implement TranslationTable

Modifier and Type	Class and Description
class	AbstractManyToOneTranslationTable an abstract class implementing basic functionality of a translation table that translates Symbols from one Alphabet to another.
class	AbstractReversibleTranslationTable an abstract class implementing basic functionality of a translation table that translates Symbols from one Alphabet to another.
class	SimpleGeneticCodeTable A genetic code translation table representing a translation table in the DDBJ/EMBL/GenBank Feature Table (appendix V).
class	SimpleManyToOneTranslationTable A no-frills implementation of a translation table that maps between two alphabets.
class	SimpleReversibleTranslationTable A no-frills implementation of TranslationTable that uses a Map to map from symbols in a finite source alphabet into a target alphabet.
class	SimpleTranslationTable A no-frills implementation of TranslationTable that uses a Map to map from symbols in a finite source alphabet into a target alphabet.

Methods in org.biojava.bio.symbol with parameters of type TranslationTable

Modifier and Type	Method and Description
static SymbolList	SymbolListViews.translate(SymbolList symbols, TranslationTable table) Provides a 'translated' view of an underlying SymbolList.