Uses of Class
org.biojava.directory.RegistryException

Packages that use RegistryException

Package	Description
org.biojava.bio.seq.db.biofetch	Client for the OBDA BioFetch protocol.
org.biojava.bio.seq.db.biosql	General purpose Sequence storage in a relational database.
org.biojava.bio.seq.db.flat	Support for OBDA flatfile databases.
org.biojava.directory	Open Bio Sequence Database Access (OBDA) registry support.

Uses of RegistryException in org.biojava.bio.seq.db.biofetch

Methods in org.biojava.bio.seq.db.biofetch that throw RegistryException

Modifier and Type	Method and Description
SequenceDBLite	BioFetchSequenceDBProvider.getSequenceDB(Map config)

Uses of RegistryException in org.biojava.bio.seq.db.biosql

Methods in org.biojava.bio.seq.db.biosql that throw RegistryException

Modifier and Type	Method and Description
SequenceDBLite	BioSQLSequenceDBProvider.getSequenceDB(Map config) Deprecated.

Uses of RegistryException in org.biojava.bio.seq.db.flat

Methods in org.biojava.bio.seq.db.flat that throw RegistryException

Modifier and Type	Method and Description
SequenceDBLite	FlatSequenceDBProvider.getSequenceDB(Map config)

Uses of RegistryException in org.biojava.directory

Subclasses of RegistryException in org.biojava.directory

Modifier and Type	Class and Description
class	ProviderNotFoundException ProviderNotFoundException is thrown when a sequence database provider can not be located.

Methods in org.biojava.directory that throw RegistryException

Modifier and Type	Method and Description
void	RegistryConfiguration.Composite.addBottomConfig(RegistryConfiguration newConfig) Add a configuration as the most default place to look.
void	RegistryConfiguration.Composite.addTopConfig(RegistryConfiguration newConfig) Add a configuration as the most authoritative place to look.
Map	RegistryConfiguration.getConfiguration() getConfiguration returns a mapping of registry database names to collections of tag-value pairs.
SequenceDBLite	Registry.getDatabase(String dbName) getDatabase retrieves a database instance known by a name String.
SequenceDBLite	SequenceDBProvider.getSequenceDB(Map config) Get a sequence database.
static RegistryConfiguration	OBDARegistryParser.parseRegistry(BufferedReader in, String locator) parseRegistry parses an Open Bioinformatics Database Access (OBDA) configuration file.