Package | Description |
---|---|
org.biojava.bio |
The core classes that will be used throughout the bio packages.
|
org.biojava.bio.dist |
Probability distributions over Alphabets.
|
org.biojava.bio.gui.sequence |
Graphical displays of biological sequences and associated annotations.
|
org.biojava.bio.seq.db |
Collections of biological sequence data.
|
org.biojava.bio.seq.projection |
Code for projecting Feature objects and systematically altering their
properties.
|
org.biojava.bio.symbol |
Representation of the Symbols that make up a sequence, and locations within
them.
|
org.biojava.utils |
Miscellaneous utility classes used by other BioJava components.
|
Modifier and Type | Method and Description |
---|---|
ChangeEvent |
OverlayAnnotation.PropertyForwarder.generateEvent(ChangeEvent ce) |
ChangeEvent |
MergeAnnotation.PropertyForwarder.generateEvent(ChangeEvent ce) |
protected ChangeEvent |
Annotatable.AnnotationForwarder.generateEvent(ChangeEvent ce)
Deprecated.
|
Modifier and Type | Method and Description |
---|---|
ChangeEvent |
OverlayAnnotation.PropertyForwarder.generateEvent(ChangeEvent ce) |
ChangeEvent |
MergeAnnotation.PropertyForwarder.generateEvent(ChangeEvent ce) |
protected ChangeEvent |
Annotatable.AnnotationForwarder.generateEvent(ChangeEvent ce)
Deprecated.
|
Modifier and Type | Method and Description |
---|---|
protected ChangeEvent |
Distribution.NullModelForwarder.generateEvent(ChangeEvent ce)
Deprecated.
|
Modifier and Type | Method and Description |
---|---|
protected ChangeEvent |
Distribution.NullModelForwarder.generateEvent(ChangeEvent ce)
Deprecated.
|
Modifier and Type | Method and Description |
---|---|
ChangeEvent |
SequenceRenderer.RendererForwarder.generateEvent(ChangeEvent ce) |
ChangeEvent |
PairwiseSequenceRenderer.PairwiseRendererForwarder.generateEvent(ChangeEvent ce)
generateEvent generates events in response to
layout change and repaint requests. |
Modifier and Type | Method and Description |
---|---|
ChangeEvent |
SequenceRenderer.RendererForwarder.generateEvent(ChangeEvent ce) |
ChangeEvent |
PairwiseSequenceRenderer.PairwiseRendererForwarder.generateEvent(ChangeEvent ce)
generateEvent generates events in response to
layout change and repaint requests. |
Modifier and Type | Method and Description |
---|---|
ChangeEvent |
SequenceDBWrapper.SequencesForwarder.generateEvent(ChangeEvent ce) |
Modifier and Type | Method and Description |
---|---|
ChangeEvent |
SequenceDBWrapper.SequencesForwarder.generateEvent(ChangeEvent ce) |
Modifier and Type | Method and Description |
---|---|
protected ChangeEvent |
ProjectedFeatureHolder.forwardChangeEvent(ChangeEvent cev)
Called internally to generate a forwarded version of a ChangeEvent from our
underlying FeatureHolder
|
Modifier and Type | Method and Description |
---|---|
protected ChangeEvent |
ProjectedFeatureHolder.forwardChangeEvent(ChangeEvent cev)
Called internally to generate a forwarded version of a ChangeEvent from our
underlying FeatureHolder
|
Modifier and Type | Method and Description |
---|---|
protected ChangeEvent |
AbstractSymbolList.EditScreener.generateEvent(ChangeEvent ce) |
protected ChangeEvent |
AbstractSymbolList.EditTranslater.generateEvent(ChangeEvent ce) |
Modifier and Type | Method and Description |
---|---|
protected ChangeEvent |
AbstractSymbolList.EditScreener.generateEvent(ChangeEvent ce) |
protected ChangeEvent |
AbstractSymbolList.EditTranslater.generateEvent(ChangeEvent ce) |
void |
SimpleSymbolList.postChange(ChangeEvent cev) |
void |
SimpleSymbolList.preChange(ChangeEvent cev)
On preChange() we convert the SymolList to a non-veiw version, giving it its own copy of symbols
|
Modifier and Type | Method and Description |
---|---|
protected ChangeEvent |
ChangeForwarder.generateEvent(ChangeEvent ce)
Return the new event to represent the originating event ce.
|
protected ChangeEvent |
ChangeForwarder.Retyper.generateEvent(ChangeEvent ce) |
ChangeEvent |
ChangeEvent.getChainedEvent()
Return the event which caused this to be fired, or
null
if this change was not caused by another event. |
ChangeEvent |
ChangeVetoException.getChangeEvent()
Return the ChangeEvent which is being vetoed.
|
ChangeEvent |
ChangeListener.ChangeEventRecorder.getEvent() |
Modifier and Type | Method and Description |
---|---|
void |
IndexedChangeHub.firePostChange(Object key,
ChangeEvent cev) |
void |
ChangeHub.firePostChange(Object key,
ChangeEvent cev)
invoke the firePostChangeEvent on all ChangeListeners associated with
a specific key.
|
void |
ChangeSupport.firePostChangeEvent(ChangeEvent ce)
Inform the listeners that a change has taken place using their
firePostChangeEvent methods.
|
void |
IndexedChangeHub.firePreChange(Object key,
ChangeEvent cev) |
void |
ChangeHub.firePreChange(Object key,
ChangeEvent cev)
invoke the firePreChangeEvent on all ChangeListeners associated with
a specific key.
|
void |
ChangeSupport.firePreChangeEvent(ChangeEvent ce)
Inform the listeners that a change is about to take place using their
firePreChangeEvent methods.
|
protected ChangeEvent |
ChangeForwarder.generateEvent(ChangeEvent ce)
Return the new event to represent the originating event ce.
|
protected ChangeEvent |
ChangeForwarder.Retyper.generateEvent(ChangeEvent ce) |
protected abstract boolean |
IndexedChangeHub.isMyChangeEvent(ChangeEvent cev,
IndexedChangeHub.ListenerMemento lm) |
void |
ChangeListener.postChange(ChangeEvent cev)
Called when a change has just taken place.
|
void |
ChangeListener.AlwaysVetoListener.postChange(ChangeEvent cev) |
void |
ChangeListener.LoggingListener.postChange(ChangeEvent cev) |
void |
ChangeForwarder.postChange(ChangeEvent ce) |
void |
ChangeAdapter.postChange(ChangeEvent ce) |
void |
ChangeListener.preChange(ChangeEvent cev)
Called before a change takes place.
|
void |
ChangeListener.AlwaysVetoListener.preChange(ChangeEvent cev) |
void |
ChangeListener.ChangeEventRecorder.preChange(ChangeEvent cev) |
void |
ChangeListener.LoggingListener.preChange(ChangeEvent cev) |
void |
ChangeForwarder.preChange(ChangeEvent ce) |
void |
ChangeAdapter.preChange(ChangeEvent ce) |
Constructor and Description |
---|
ChangeEvent(Object source,
ChangeType type,
Object change,
Object previous,
ChangeEvent chain)
Construct a ChangeEvent to be fired because another ChangeEvent has
been received from a property object.
|
ChangeVetoException(ChangeEvent change)
Construct an exception to veto a change without explanation.
|
ChangeVetoException(ChangeEvent change,
String reason)
Construct an exception to veto a change for a specified reason.
|
ChangeVetoException(Throwable ex,
ChangeEvent change)
Propogate an exception without (additional) explanation.
|
ChangeVetoException(Throwable ex,
ChangeEvent change,
String reason)
Propogate an exception, giving a detail message
|
Copyright © 2014 BioJava. All rights reserved.