Uses of Class
org.biojava.utils.ChangeForwarder

Packages that use ChangeForwarder

Package	Description
org.biojava.bio	The core classes that will be used throughout the bio packages.
org.biojava.bio.dist	Probability distributions over Alphabets.
org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.
org.biojava.bio.gui.sequence	Graphical displays of biological sequences and associated annotations.
org.biojava.bio.search	Interfaces and classes for representing sequence similarity search results.
org.biojava.bio.seq	Classes and interfaces for defining biological sequences and informatics objects.
org.biojava.bio.seq.db	Collections of biological sequence data.
org.biojava.bio.seq.impl	Standard in-memory implementations of Sequence and Feature.
org.biojava.bio.symbol	Representation of the Symbols that make up a sequence, and locations within them.
org.biojava.utils	Miscellaneous utility classes used by other BioJava components.

Uses of ChangeForwarder in org.biojava.bio

Subclasses of ChangeForwarder in org.biojava.bio

Modifier and Type	Class and Description
static class	Annotatable.AnnotationForwarder Deprecated. use new ChangeForwarder.Retyper(source, cs, Annotation.PROPERTY) instead
protected class	MergeAnnotation.PropertyForwarder Listener used to forward changes for any of the underlying annotations to listeners on this annotation.
protected class	OverlayAnnotation.PropertyForwarder Forwards change events from the underlying Annotation to this one.

Uses of ChangeForwarder in org.biojava.bio.dist

Subclasses of ChangeForwarder in org.biojava.bio.dist

Modifier and Type	Class and Description
static class	Distribution.NullModelForwarder Deprecated. use new ChangeForwarder.Retyper(this, cs, Annotation.PROPERTY) instead

Fields in org.biojava.bio.dist declared as ChangeForwarder

Modifier and Type	Field and Description
protected ChangeForwarder	AbstractDistribution.nullModelForwarder Forwarder for modifications to the null model.
protected ChangeForwarder	AbstractOrderNDistribution.weightForwarder The listener that will forward events from the underlying distributions to listeners for this distribution.

Uses of ChangeForwarder in org.biojava.bio.dp

Fields in org.biojava.bio.dp declared as ChangeForwarder

Modifier and Type	Field and Description
protected ChangeForwarder	SimpleEmissionState.annotationForwarder
protected ChangeForwarder	SimpleEmissionState.distForwarder

Uses of ChangeForwarder in org.biojava.bio.gui.sequence

Subclasses of ChangeForwarder in org.biojava.bio.gui.sequence

Modifier and Type	Class and Description
static class	PairwiseSequenceRenderer.PairwiseRendererForwarder PairwiseRendererForwarder forward events to other renderers.
static class	SequenceRenderer.RendererForwarder

Uses of ChangeForwarder in org.biojava.bio.search

Fields in org.biojava.bio.search declared as ChangeForwarder

Modifier and Type	Field and Description
protected ChangeForwarder	SimpleSeqSimilaritySearchSubHit.annotationForwarder
protected ChangeForwarder	SimpleSeqSimilaritySearchResult.annotationForwarder
protected ChangeForwarder	SimpleSeqSimilaritySearchHit.annotationForwarder
protected ChangeForwarder	SequenceDBSearchSubHit.annotationForwarder Deprecated.
protected ChangeForwarder	SequenceDBSearchResult.annotationForwarder Deprecated.
protected ChangeForwarder	SequenceDBSearchHit.annotationForwarder Deprecated.

Uses of ChangeForwarder in org.biojava.bio.seq

Fields in org.biojava.bio.seq declared as ChangeForwarder

Modifier and Type	Field and Description
protected ChangeForwarder	SimpleAssembly.annotationForwarder
protected ChangeForwarder	NewSimpleAssembly.annotationForwarder

Uses of ChangeForwarder in org.biojava.bio.seq.db

Subclasses of ChangeForwarder in org.biojava.bio.seq.db

Modifier and Type	Class and Description
protected class	SequenceDBWrapper.SequencesForwarder

Uses of ChangeForwarder in org.biojava.bio.seq.impl

Fields in org.biojava.bio.seq.impl declared as ChangeForwarder

Modifier and Type	Field and Description
protected ChangeForwarder	SubSequence.annotationForwarder

Uses of ChangeForwarder in org.biojava.bio.symbol

Subclasses of ChangeForwarder in org.biojava.bio.symbol

Modifier and Type	Class and Description
class	AbstractSymbolList.EditScreener This adapter screens all edit events to see if they overlap with a window of interest.
class	AbstractSymbolList.EditTranslater This translates edit events that fall within a window into window co-ordinates.

Fields in org.biojava.bio.symbol declared as ChangeForwarder

Modifier and Type	Field and Description
protected ChangeForwarder	SimpleAlphabet.annotationForwarder
protected ChangeForwarder	AbstractSymbol.annotationForwarder

Uses of ChangeForwarder in org.biojava.utils

Subclasses of ChangeForwarder in org.biojava.utils

Modifier and Type	Class and Description
static class	ChangeForwarder.Retyper A ChangeForwarder that systematically uses a given type and wraps the old event.

Methods in org.biojava.utils with parameters of type ChangeForwarder

Modifier and Type	Method and Description
void	Unchangeable.addForwarder(ChangeForwarder cf, ChangeType ct)
void	Unchangeable.removeForwarder(ChangeForwarder cf, ChangeType ct)