Uses of Class
org.biojava.utils.ParseErrorEvent

Packages that use ParseErrorEvent

Package	Description
org.biojava.bio.program.phred	Parser for Phred output
org.biojava.bio.seq.io	Classes and interfaces for processing and producing flat-file representations of sequences.
org.biojava.utils	Miscellaneous utility classes used by other BioJava components.

Uses of ParseErrorEvent in org.biojava.bio.program.phred

Methods in org.biojava.bio.program.phred with parameters of type ParseErrorEvent

Modifier and Type	Method and Description
void	PhredFormat.BadLineParsed(ParseErrorEvent theEvent) This method determines the behaviour when a bad line is processed.
protected void	PhredFormat.notifyParseErrorEvent(ParseErrorEvent theEvent) Passes the event on to all the listeners registered for ParseErrorEvents.

Uses of ParseErrorEvent in org.biojava.bio.seq.io

Methods in org.biojava.bio.seq.io with parameters of type ParseErrorEvent

Modifier and Type	Method and Description
void	StreamReader.BadLineParsed(ParseErrorEvent theEvent) This method determines the behaviour when a bad line is processed.
void	GenbankFormat.BadLineParsed(ParseErrorEvent theEvent) Deprecated. This method determines the behaviour when a bad line is processed.
void	FastaFormat.BadLineParsed(ParseErrorEvent theEvent) Deprecated. This method determines the behaviour when a bad line is processed.
void	EmblLikeFormat.BadLineParsed(ParseErrorEvent theEvent) Deprecated. This method determines the behaviour when a bad line is processed.
protected void	SwissprotProcessor.notifyParseErrorEvent(ParseErrorEvent theEvent) Deprecated. Passes the event on to all the listeners registered for ParseErrorEvents.
protected void	GenbankProcessor.notifyParseErrorEvent(ParseErrorEvent theEvent) Deprecated. Passes the event on to all the listeners registered for ParseErrorEvents.
protected void	GenbankFormat.notifyParseErrorEvent(ParseErrorEvent theEvent) Deprecated. Passes the event on to all the listeners registered for ParseErrorEvents.
protected void	FastaFormat.notifyParseErrorEvent(ParseErrorEvent theEvent) Deprecated. Passes the event on to all the listeners registered for ParseErrorEvents.
protected void	EmblProcessor.notifyParseErrorEvent(ParseErrorEvent theEvent) Deprecated. Passes the event on to all the listeners registered for ParseErrorEvents.
protected void	EmblLikeFormat.notifyParseErrorEvent(ParseErrorEvent theEvent) Deprecated. Passes the event on to all the listeners registered for ParseErrorEvents.

Uses of ParseErrorEvent in org.biojava.utils

Methods in org.biojava.utils with parameters of type ParseErrorEvent

Modifier and Type	Method and Description
void	ParseErrorListener.BadLineParsed(ParseErrorEvent theEvent) Method called when the parser encounters a bad line.