Package | Description |
---|---|
org.biojava.bio.program.sax.blastxml |
Parsers for the XML output from NCBI blast.
|
org.biojava.bio.program.ssbind |
Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD.
|
org.biojava.bio.program.xff |
Event-driven parsing system for the Extensible Feature Format (XFF).
|
org.biojava.bio.seq.io.filterxml |
Tools for reading and writing an XML representation of BioJava's FeatureFilter language.
|
org.biojava.bio.seq.io.game |
Event-driven parsing system for the Gene Annotation Markup Elements (GAME).
|
org.biojava.bio.seq.io.game12 |
Event-driven parsing system for the Gene Annotation Markup Elements (GAME).
|
org.biojava.utils.stax |
The Stack API for XML (StAX).
|
Modifier and Type | Method and Description |
---|---|
void |
BlastXMLParser.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm)
we override the superclass startElement method so we can determine the
the start tag type and use it to set up delegation for the superclass.
|
Modifier and Type | Method and Description |
---|---|
void |
SeqSimilarityStAXHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
SeqSimilarityStAXAdapter.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
Modifier and Type | Method and Description |
---|---|
void |
XFFFeatureSetHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
StrandedFeatureHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
PropDetailHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
LocationHandlerBase.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
FeatureHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm)
StAX callback for element starts.
|
Modifier and Type | Method and Description |
---|---|
void |
XMLAnnotationTypeHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
Modifier and Type | Method and Description |
---|---|
void |
StAXPropertyHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm)
Override this to do any processing required but call this
prior to returning.
|
void |
StAXFeatureHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm)
Handles basic entry processing for all feature handlers.
|
void |
SequenceContentHandlerBase.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
GAMETypePropHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
GAMEResiduesPropHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
GAMENamePropHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
GAMEDescriptionPropHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
GAMEAspectPropHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
GAMEHandler.startElementHandler(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
Modifier and Type | Method and Description |
---|---|
void |
StAXFeatureHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm)
Handles basic entry processing for all feature handlers.
|
Modifier and Type | Method and Description |
---|---|
void |
StringElementHandlerBase.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
StAXContentHandlerBase.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
StAXContentHandler.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
LongElementHandlerBase.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
IntElementHandlerBase.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
FloatElementHandlerBase.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
DoubleElementHandlerBase.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
CharElementHandlerBase.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
ByteElementHandlerBase.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
void |
BooleanElementHandlerBase.startElement(String nsURI,
String localName,
String qName,
Attributes attrs,
DelegationManager dm) |
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