org.biojavax

Class SimpleRankedDocRef

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojavax.SimpleRankedDocRef

All Implemented Interfaces:

Comparable, Changeable, RankedDocRef

public class SimpleRankedDocRef
extends AbstractChangeable
implements RankedDocRef

Represents a documentary reference.

Since:

1.5

Author:

Richard Holland, gwaldon

Field Summary

Fields inherited from interface org.biojavax.RankedDocRef

LOCATION, RANK

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	SimpleRankedDocRef()
	SimpleRankedDocRef(DocRef docref, Integer start, Integer end, int rank) Constructs a new docref for a given location.
	SimpleRankedDocRef(DocRef docref, RichLocation location, int rank) Constructs a new docref for a given location.

Method Summary

Methods

Modifier and Type	Method and Description
int	compareTo(Object o) Ranked document references are sorted first by rank then location then by actual document reference.
boolean	equals(Object obj) Two ranked document references are equal if they have the same rank and refer to the same location and same document reference.
DocRef	getDocumentReference() Represents a reference to a document.
Integer	getEnd() The end position in the sequence that this reference is referred to from.
RichLocation	getLocation() If this object was constructed using a location instead of two integers, then this method will return that location.
int	getRank() The rank of this reference.
Integer	getStart() The start position in the sequence that this reference is referred to from.
int	hashCode()
void	setLocation(RichLocation location) Set the location of this reference.
void	setRank(int rank) Set the rank of this reference.
String	toString() Form: "(#rank) docref"

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable

addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Constructor Detail

SimpleRankedDocRef

public SimpleRankedDocRef(DocRef docref,
                  Integer start,
                  Integer end,
                  int rank)

Constructs a new docref for a given location. If one or the other of start and end are null, only the non-null value is used. If both are null, no value is used for the location.

Parameters:

docref - the document reference. Must not be null.

start - the start position of the location.

end - the end position of the location.

SimpleRankedDocRef

public SimpleRankedDocRef(DocRef docref,
                  RichLocation location,
                  int rank)

Constructs a new docref for a given location.

Parameters:

docref - the document reference. Must not be null.

location - the position of the document reference. Must not be null.

SimpleRankedDocRef

protected SimpleRankedDocRef()

Method Detail

setRank

public void setRank(int rank)
             throws ChangeVetoException

Set the rank of this reference.

Specified by:

setRank in interface RankedDocRef

Parameters:

rank - the rank to use.

Throws:

ChangeVetoException - if the new rank is unacceptable.

getRank

public int getRank()

The rank of this reference. This value is intended to be set by the constructor of the implementing class.

Specified by:

getRank in interface RankedDocRef

Returns:

the rank.

getDocumentReference

public DocRef getDocumentReference()

Represents a reference to a document. This value is intended to be set by the constructor of the implementing class.

Specified by:

getDocumentReference in interface RankedDocRef

Returns:

the document reference.

getStart

public Integer getStart()

The start position in the sequence that this reference is referred to from. This value is intended to be set by the constructor of the implementing class. The position returned is from 1 to the length of the sequence.

Specified by:

getStart in interface RankedDocRef

Returns:

the start position.

getEnd

public Integer getEnd()

The end position in the sequence that this reference is referred to from. This value is intended to be set by the constructor of the implementing class. The position returned is from 1 to the length of the sequence.

Specified by:

getEnd in interface RankedDocRef

Returns:

the end position.

setLocation

public void setLocation(RichLocation location)
                 throws ChangeVetoException

Set the location of this reference.

Specified by:

setLocation in interface RankedDocRef

Parameters:

location - the location to use.

Throws:

ChangeVetoException - if the new location is unacceptable.

getLocation

public RichLocation getLocation()

Description copied from interface: RankedDocRef

If this object was constructed using a location instead of two integers, then this method will return that location. The getStart() and getEnd() methods will then return the min and max of that location, using the default location position resolver to resolve them to exact positions. If this object was constructed using two integers, then this method will return a simple location whose min and max correspond to those integers.

Specified by:

getLocation in interface RankedDocRef

Returns:

the location of this reference on the sequence.

equals

public boolean equals(Object obj)

Two ranked document references are equal if they have the same rank and refer to the same location and same document reference.

Overrides:

equals in class Object

compareTo

public int compareTo(Object o)

Ranked document references are sorted first by rank then location then by actual document reference.

Specified by:

compareTo in interface Comparable

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Form: "(#rank) docref"

Overrides:

toString in class Object