Uses of Interface
org.biojavax.bio.BioEntryRelationship

Packages that use BioEntryRelationship

Package	Description
org.biojavax.bio	Classes to represent biological entities and their relationships.
org.biojavax.bio.seq.io	Classes to support the I/O of RichSequence and Bioentry objects.

Uses of BioEntryRelationship in org.biojavax.bio

Classes in org.biojavax.bio that implement BioEntryRelationship

Modifier and Type	Class and Description
class	SimpleBioEntryRelationship Represents a relationship between two bioentries that is described by a term and given a rank.

Methods in org.biojavax.bio that return types with arguments of type BioEntryRelationship

Modifier and Type	Method and Description
Set<BioEntryRelationship>	SimpleBioEntry.getRelationships() Returns a set of all relationships associated with this bioentry.
Set<BioEntryRelationship>	BioEntry.getRelationships() Returns a set of all relationships associated with this bioentry.

Methods in org.biojavax.bio with parameters of type BioEntryRelationship

Modifier and Type	Method and Description
void	SimpleBioEntry.addRelationship(BioEntryRelationship relation) Adds a relation instance to this bioentry.
void	BioEntry.addRelationship(BioEntryRelationship relation) Adds a relation instance to this bioentry.
void	SimpleBioEntry.removeRelationship(BioEntryRelationship relation) Removes a relation instance from this bioentry.
void	BioEntry.removeRelationship(BioEntryRelationship relation) Removes a relation instance from this bioentry.

Uses of BioEntryRelationship in org.biojavax.bio.seq.io

Methods in org.biojavax.bio.seq.io with parameters of type BioEntryRelationship

Modifier and Type	Method and Description
void	SimpleRichSequenceBuilder.setRelationship(BioEntryRelationship relationship) Call back method so the event emitter can tell the listener about a relationship between the bioentry or sequence in the record being read and another bioentry.
void	RichSeqIOListener.setRelationship(BioEntryRelationship relationship) Call back method so the event emitter can tell the listener about a relationship between the bioentry or sequence in the record being read and another bioentry.
void	RichSeqIOAdapter.setRelationship(BioEntryRelationship relationship)
void	DebuggingRichSeqIOListener.setRelationship(BioEntryRelationship relationship)